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Anopheles gambiae
cluster # 3356 cluster # 3356       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3356#0 length = 674 sequences # 1  
consensus_3356#1 length = 613 sequences # 1  
consensus_3356#2 length = 265 sequences # 1  

consensusID : consensus_3356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT]

[+] EMBL AL696111             [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT]


>consensus_3356#0 GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACG ACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAA ACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTA ACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGT GCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACA GGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGA TTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGT GACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCAT NATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGA ACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAAT ATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAA CNACANCGACNCAT



consensusID : consensus_3356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA]

[+] EMBL BM588158             [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA]


>consensus_3356#1 CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATA AAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTC TGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCT GCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATA CATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATA GTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTG TACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTT TCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTT TTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTT GGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACG GCAAGGGCAAGGA



consensusID : consensus_3356#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence
                              [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT]

[+] EMBL AGA280193            [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT]


>consensus_3356#2 TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGT GAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACG ATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGC TTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCA AATACTGCCGCCTGCCTGCCTGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3356#0      GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACG 60
consensus_3356#1      ------------------------------CCGCGGACGCGTGG-GTTGTTATTTA-GCG 28
consensus_3356#2      --------------------------------------------------TTTTTTAGCG 10
                                                                        * ***   **

consensus_3356#0      ACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCA- 119
consensus_3356#1      AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 82
consensus_3356#2      AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 64
                      **    *****   *      ** ** * **** ** ****** *  ***  ** *  * 

consensus_3356#0      -AACCCTACCAAGGATCGGGCATGACAATACCGTACTGGG----ATTTCATAGGTACGAT 174
consensus_3356#1      CGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAAT 142
consensus_3356#2      CGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCG--GGTACGAT 122
                        **     *  *   ** **     ** * * ** *  *     * **    *    **

consensus_3356#0      TTCGTAACGAACTCTTACGTTCGG-TGACGCCGGATCTGATCGAAAATGGGGCCCTTGGA 233
consensus_3356#1      TGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTG-----TTCTA 197
consensus_3356#2      CCGG---------CTGCTACTCGC--AACTCC---TCTGCTCGATACAAA----CCACAA 164
                                   **       *     *  *    *** ** *               *

consensus_3356#0      ATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCG 293
consensus_3356#1      GTTACAA---CTGCACTAGAACCAACATCGAC-----GAGTAAACGTAATA---CATCCA 246
consensus_3356#2      GCCACGA---CAGAACGGCTTGCAGTGAAGAATC------CTATTTTCACACATTTTTGG 215
                         *      * *  *       *     **           *   * * *         

consensus_3356#0      TGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCC 353
consensus_3356#1      TTGCGACAAGCCAAGG-----CGGAACAGC-GAAAGACA--TGCAAATGTTTGGCATCG- 297
consensus_3356#2      TTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT---------- 265
                      *  *     *   *        *  *   * *         ***                

consensus_3356#0      CGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTC 413
consensus_3356#1      -ATAGTAGAAAAGCCACAACCTTC-----CCGGCGTATGTGGTATCT-GGACT---TCTG 347
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      ATATGGTGACGTCGACCATACAATNCCTGG-AGAACGATAACCAGNAACCACCACACATG 472
consensus_3356#1      TTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTAC-AATGACTACATGAAACG 406
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      GGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAA 532
consensus_3356#1      AG----AGCATTCCCTTTTCAAACCC--TACCAA-GGATCGGGCATGACAATACCGTACT 459
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      TGGGTAGAACA--TACAGCTATAGAAATCAACCANCAAAC---GCTGAAAGGAGA-CGAC 586
consensus_3356#1      GGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGC 519
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      AACANACCACAAATATAANAGAGAA--ATGCAGAAGAGCCAANAATCAACGCGAAATGTA 644
consensus_3356#1      AATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCC 579
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      ANGGGNAATTATNGAACNACANCGACN-CAT--- 674
consensus_3356#1      AGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA 613
consensus_3356#2      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)