cluster # 3364

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3364 cluster # 3364 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3364#0 length = 491 sequences # 1

consensus_3364#1 length = 474 sequences # 2

consensusID : consensus_3364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAGATTGTTTGTCAGCGG]

[+] EMBL BM626649             [CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAGATTGTTTGTCAGCGG]




>consensus_3364#0
CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTT
TTTTACTCTTCGTCAAGCTTGTTACTTCTATGATCGGTTTTTTTGCCACACGTGTGATTC
TTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTGAAGT
GGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTC
ACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGG
CTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCA
ATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTCGGTT
CGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAGATTG
TTTGTCAGCGG

consensusID : consensus_3364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 474
fasta sequence

                              [GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAG-ACTGTGAAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT]

[+] EMBL BM621721             [GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAG ACTGTGAAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT]
[+] EMBL CNS08UYO             [                       AGAAGACGACCTCAGAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAGCACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCA GGCAGAAGTGTGTTCTGTGTGACTGTTTCTCTGGCTGCAATGTC                                                                                                                                                                  ]




>consensus_3364#1
GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTTTT
TTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGAT
TCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAGACTGTGAA
GTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGC
TCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCT
GGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGT
CAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTCGG
TTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3364#0      CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTT 60
consensus_3364#1      --GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTT 58
                        * **    ** **      ***  ************* ******* ************

consensus_3364#0      TTTTACTCTTCGTCAAGCTTGTTACTTCT----ATGATCGGTTTTTTTGCCACACGTGTG 116
consensus_3364#1      TTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTG 118
                      *****************************    ***************************

consensus_3364#0      ATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTG 176
consensus_3364#1      ATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAGACTGTG 178
                      ************************************************* **********

consensus_3364#0      AAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGAT 236
consensus_3364#1      AAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGAT 238
                      ********************* **************************************

consensus_3364#0      GCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCT 296
consensus_3364#1      GCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCT 298
                      ************************************************************

consensus_3364#0      CTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAA 356
consensus_3364#1      CTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAA 358
                      ******************* ****************************************

consensus_3364#0      GTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTC 416
consensus_3364#1      GTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTC 418
                      ******************************** ******* *******************

consensus_3364#0      GGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAG 476
consensus_3364#1      GGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT---- 474
                      ********************************************************    

consensus_3364#0      ATTGTTTGTCAGCGG 491
consensus_3364#1      ---------------