These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence [TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACACACAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCTTCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCGCGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGCTCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGCAATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGTGCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTACCTGCCTCGGTGGTAACAGTTTCACCACGC] [+] EMBL BX618242 [TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACACACAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCTTCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCGCGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGCTCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGCAATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGTGCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTACCTGCCTCGGTGGTAACAGTTTCACCACGC] consensusID : consensus_3371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence [CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACACTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGAAGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCGGGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGAAAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT] [+] EMBL BM621328 [CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACACTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGAAGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCGGGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGAAAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT] [+] EMBL BX608391 [ GCCACTCGACGCCGGTCACCACCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCCGCCAGCAGACGGAAGCTACCGAGATGAACCTGAAGCTCGCAACCGGATTACTTTCGTCGGGTATTATTACGACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3371#0 ------------------------------------------------------------ consensus_3371#1 CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACA 60 consensus_3371#0 ------------------------------------------------------------ consensus_3371#1 CTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGA 120 consensus_3371#0 ------------------------------------------------------------ consensus_3371#1 AGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCG 180 consensus_3371#0 -----TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACAC----A 51 consensus_3371#1 GGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGA 240 *** * * ** * *** ** *** * * consensus_3371#0 CAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGA 111 consensus_3371#1 AAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGA 300 * ********************************************************* consensus_3371#0 TCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCG 171 consensus_3371#1 TCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCG 360 ************************************************************ consensus_3371#0 GCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGG 231 consensus_3371#1 GCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGG 420 ************************************************************ consensus_3371#0 TCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGC 291 consensus_3371#1 TCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGC 480 ************************************************************ consensus_3371#0 TCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCC 351 consensus_3371#1 TCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCC 540 **************************************************** ****** consensus_3371#0 GCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCG 411 consensus_3371#1 GCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCG 600 ************************************************************ consensus_3371#0 CAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACG 471 consensus_3371#1 CAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACG 660 ***************************** ****************************** consensus_3371#0 AAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCT 531 consensus_3371#1 AAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT----- 715 ******************************************************* consensus_3371#0 TCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCG 591 consensus_3371#1 ------------------------------------------------------------ consensus_3371#0 CGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGC 651 consensus_3371#1 ------------------------------------------------------------ consensus_3371#0 TCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGC 711 consensus_3371#1 ------------------------------------------------------------ consensus_3371#0 AATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGT 771 consensus_3371#1 ------------------------------------------------------------ consensus_3371#0 GCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTA 831 consensus_3371#1 ------------------------------------------------------------ consensus_3371#0 CCTGCCTCGGTGGTAACAGTTTCACCACGC 861 consensus_3371#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||