These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence [CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTAACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAATGGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGGTTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATCATGGTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAACAAAACAGGCGAAGCGTGGTCAATCCACGCGTCTCTTCAACAACCACAGTTTGTACATAGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTG] [+] EMBL BM632690 [CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTAACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAATGGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGGTTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATCATGGTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAACAAAACAGGCGAAGCGT ] [+] EMBL BX623331 [ GGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAGACGCTGAAGGAGCTGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCAGCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGTGGTGGCGGCGGTGATGGTAGCGGATCATCACACCCGTACCCCACCCGTAGTCCGTGCCGGTTGTTCCGGAACCGAATCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTTGCAAGTGTGTCCTCCCACCATGGGGAAGGTTAGCAGTTACCATTCATGGCATCAT GTGGGGCGCCGTCGGCGCCTGTTTTGGAAAGGGGAAAGTTTAGCGCGGGGGAGGTAAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGCCACCTTTTCACCAGCAAAACAGGCGAGGCGAGGTCAATCCACGCGTCTCTTCAACAACCACAGTTTGTACATAGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTG] consensusID : consensus_3378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGGTTGGTCAGTACAGAGAGAGAGAGAGATAGAAAGAGAGCTAGTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGAAAGTCAACACGGCGGAAGTAACTATAATACAAATAGCAGCAGCAGCAAGCATTATGTATAGTTAAGTAAGTACGTTAAGCTTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTGTTTGTGTGTACGCATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGACACAGACAACTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACAGTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGTAGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGTTGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAACTG] [+] EMBL BM620879 [CCGGTTGGTCAGTACAGAGAGAGAGAGAGATAGAAAGAGAGCTAGTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGAAAGTCAACACGGCGGAAGTAACTATAATACAAATAGCAGCAGCAGCAAGCATTATGTATAGTTAAGTAAGTACGTTAAGCTTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTGTTTGTGTGTACGCATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGACACAGACAACTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACAGTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGTAGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTTTGGTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGTTGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3378#0 CCGGCGGTCATACCGCCGTCGCTCAAGTCGCAGCTGACCGTTACGCCTGCCGGTGCCGTA 60 consensus_3378#1 ------------------------------------------------------------ consensus_3378#0 ACCAACACGAACACCACCACCACCATCAACAACAACAGCATCCACAACGTGAACGCGAAT 120 consensus_3378#1 ------------------------------------------------------------ consensus_3378#0 GGCGGTGGCGGCGGGCTGGTGGAGGAGCTCCACATCGACTACAAGGAAAAGTACGAACAG 180 consensus_3378#1 ---------------CCGGTTGGTCAG-TACAGAGAGAGAGAGAGATAGAAAGAGAGCTA 44 * *** * ** * ** * ** ** * * ** * consensus_3378#0 ACGCTGAAGGAGC-TGTTCGCCTGCCGGAAGATCGTGAAGAACCAGAACAAAGCGATCCA 239 consensus_3378#1 GTGAGGAAAGGACACAAATAGTCGCCAAAATAGTGTGGTGGGGTAAGCGGTTGGAAGCGA 104 * *** * * *** ** * *** * * * * * * consensus_3378#0 GCAGCAGCAGAAGGAGATCGATTTCCTTAACCTGCTGCTGAAGGAGAAATGATCCGAAGT 299 consensus_3378#1 AAGTCAACACGGCGGAAGTAACTATAATA-CAAATAGCAGCAGCAGCAAGCATTATGTAT 163 ** ** * * * * ** * ** * ** ** ** ** * consensus_3378#0 GGTGGCGGCGGTGCTGGTAGCGGATCATCACACCCGTAGCCCACCCGTAGTCCGTTCCGG 359 consensus_3378#1 AGTTAAGTAAGTACGTTAAGC---TTAAGGCATTTGGGATTTCTATCGGATGTGTGTTTG 220 ** * ** * *** * * ** * * ** * consensus_3378#0 TTGCTCCGGAACCGATTCCGGTGGCGTTCTGTTGGCGTGCTAGGACAAAAGAGCACGGTT 419 consensus_3378#1 TTTGTGTGTACGC-ATATTGTTTGTGTCTTGTTAGAACAAACACATTTACAGACACAGAC 279 ** * * * * ** * * * ** **** * * * *** * consensus_3378#0 GCAAGTGTGTCCTCCCACCGTGGGGAAGGTTAGCAGTTACCATTCATGGCATC----ATG 475 consensus_3378#1 ACAGACAA---CTGCAATTTCGGCTAGGTGTAATATTCAACAGGTGTGTGGTTGAAAACA 336 ** ** * * ** * * ** * * * ** ** * * consensus_3378#0 GTGGGGCGCCGTCGGCGCCTGTTTTGGAAAAGGGAAAGTTT-----AGCGCGGGGGAGGT 530 consensus_3378#1 GTGTTGTGCAATCAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGTAGGAAAAGT 396 *** * ** ** * * * ** ** ** * * ** * ** consensus_3378#0 AAATACGTTAGTGTAAAATAAAAGTAGAAGGAACATTCCATTTGC-CACCTTTTCACCAA 589 consensus_3378#1 AGGGCTTATAGTAAAAAAGAAAGTCAATACACACACACTGGAAGAACGCCATGACACAGG 456 * **** **** *** * * *** * * * ** * *** consensus_3378#0 CAAAACAGGCG-AAGCGTGGTCAATCCACGCGTCTCTTCAACAACCA-CAGTTTGTACAT 647 consensus_3378#1 ACACACAAACACAAGAGATGGAGATAC-TGTGGCGAGGTATTAGCTATCCGTTTG----- 510 * *** * *** * * ** * * * * * * * * * ***** consensus_3378#0 AGAAGGGAAGGTTCTGAGGGCATTTAGGTAGACAGAGGACACACACTGGAAGAACGCCAT 707 consensus_3378#1 GTAATTTAACTTTCTAACTGATAAAAGGGATACGGGGGGCGAATAGTAAATTTAGCTGGT 570 ** ** **** * * *** * ** * ** * * * * * * * consensus_3378#0 GACACAGGACACACAAACACAAGAGATGGAGATACTGTGGCGAGGTATTAGCTATCCGTT 767 consensus_3378#1 TGGTCAGTACAGAGAAGAGAGAGAGAGAGCGAGAAAGAGAGTAAAGTTAAATTATTCAAC 630 *** *** * ** ***** * ** * * * * * * *** * consensus_3378#0 TGGTAATTTAACTTTCTAACTG 789 consensus_3378#1 TG-------------------- 632 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||