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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATCAACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCGGGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAACTGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTCCGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGAAGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCCCCCCTTCC]
[+] EMBL BX619123 [CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATCAACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCGGGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAACTGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTCCGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGAAGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCCCCCCTTCC]
consensusID : consensus_3380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[GTTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAAATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAACAAAATGCTACTGATCAGGAATTAAACTAACGTTTAGATATACACACACACACATACACACATACACACACACAAACACAAGTAACGTGGCAAAACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCCGAACTGTACCTGCAGACCGTCGTAAGCAGTGCTGGCACTGGTTTTCGCACTTGGACTGTCCGTTTGTTGGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT]
[+] EMBL AGA280407 [GTTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAAATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAACAAAATGCTACTGATCAGGAATTAAACTAACGTTTAGATATACACACACACACATACACACATACACACACACAAACACAAGTAACGTGGCAAAACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCCGAACTGTACCTGCAGACCGTCGTAAGCAGTGCTGGCACTGGTTTTCGCACTTGGACTGTCCGTTTGTTGGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT]
consensusID : consensus_3380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAACAGTGTCCACGACAGATTTCGTCGATCAGGCTGCCCGAAGTTAACTTATTTTGTCTG]
[+] EMBL BM584779 [CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAACAGTGTCCACGACAGATTTCGTCGATCAGGCTGCCCGAAGTTAACTTATTTTGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3380#0 --------CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCA 52
consensus_3380#2 CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCA 60
consensus_3380#1 -----------------------------------------------------------G 1
consensus_3380#0 CC-ACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCG-GTATGGTGTATAATGGA 110
consensus_3380#2 CCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCG-GTATGGTGTATAATGGA 119
consensus_3380#1 TTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAA 61
* * * * * ** ** * * ** * ** * * *** *
consensus_3380#0 ACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGAT 170
consensus_3380#2 ACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGAT 179
consensus_3380#1 ATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAAC 121
* *** ** ** * * ** * ** * * ** * * * * * * *
consensus_3380#0 GATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATC 230
consensus_3380#2 GATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAA--CAGT 237
consensus_3380#1 AAAATGCTACTGATCAGGAATTAAAC-TAAC--GTTTAGATATACACAC-ACACA-CATA 176
* * * * * * * **** *** * * ** * * * **
consensus_3380#0 AACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCG 290
consensus_3380#2 GTCCACGAC-AGATTTCG---TCGATCAGGCTGC----CCGAAGTTAACTTATTTTGTCT 289
consensus_3380#1 CACACATACACACACACAAACACAAGTAACGTGG----------------CAA------- 213
* ** * * * **
consensus_3380#0 GGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAAC 350
consensus_3380#2 G----------------------------------------------------------- 290
consensus_3380#1 ---AACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCC------GAAC 264
consensus_3380#0 TGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTC 410
consensus_3380#2 ------------------------------------------------------------
consensus_3380#1 TGTA-CCTGCAGACCGTCGTAAGCAGTGCTGG-CACTGGTTTT-CGCACTTGG-ACTGTC 320
consensus_3380#0 CGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGA 470
consensus_3380#2 ------------------------------------------------------------
consensus_3380#1 CGTTTGTT-GGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT------------ 367
consensus_3380#0 AGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCC 530
consensus_3380#2 ------------------------------------------------------------
consensus_3380#1 ------------------------------------------------------------
consensus_3380#0 CCCCTTCC 538
consensus_3380#2 --------
consensus_3380#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||