These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGGAGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAACAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGGGTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACCGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACCATTGCAGTTGATGGAGTAGT] [+] EMBL AGA280512 [TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGGAGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAACAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGGGTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACCGGGACACTCGATGT ] [-] EMBL AGA282215 [ ACGGCGGGTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCTTCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACCATTGCAGTTGATGGAGTAGT] consensusID : consensus_3390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GTGATGAACAAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTNGTCTAGGGTTCGT] [-] EMBL AGA283049 [GTGATGAACAAGTAGATGAGTCTGATGACACGGAGACTGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTGCCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTCTGTCCTGTTGTNGTCTAGGGTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3390#0 TTTTTTATGTATTTAATTCTCATTTATTAGGCAGAAAAGTTCACATGAGGTTTTTTAAGG 60 consensus_3390#1 ------------------------------------------------------------ consensus_3390#0 AGTTGTAGCAAAAAGTAACCAAACGAATCCAATAAGGTGTAAAGAAGGAATGACATTTAA 120 consensus_3390#1 ------------------------------------------------------------ consensus_3390#0 CAACAAACGAAAGGTAGGGTCAACCTGTCAGGCGTTATGACACAACTGTCAAATACCAGG 180 consensus_3390#1 ------------------------------------------------------------ consensus_3390#0 GTTCATATATAACACTCCTCCCTTCTTAGAAATGAACTACGGCGAGTATCGCAACGGCGG 240 consensus_3390#1 ------------------------------------------------------------ consensus_3390#0 GTTTCGCAGTCTTGTAGAACGGCGGACGAAGGGCGGGGCGTCACTGGCTCGGATCGGGCT 300 consensus_3390#1 ------------------------------------------------------------ consensus_3390#0 TCCTGTCGGTGTGTCATACGATGAATCGGACGCAGTAAATGAGTCTGATGACACGGAGAC 360 consensus_3390#1 ----------------------GTGATGAACA-AGTAGATGAGTCTGATGACACGGAGAC 37 * * ** **** ********************** consensus_3390#0 TGTCCGAGATGAAACCGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTG 420 consensus_3390#1 TGTCCGAGATGAAACGGGGACACTCGATGTTTGTGGAGAGTCGGTTGACCCGTAGTAGTG 97 *************** ******************************************** consensus_3390#0 CCTGCGGTGATGGTGTACCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTC 480 consensus_3390#1 CCTGCGGTGATGGTGTAKCTCCGGAGTTTGAGTTGGTACAGGTACACTTCGCGGCTGTTC 157 ***************** ****************************************** consensus_3390#0 TGTCCTGTTGTCGTCTAGGGTTGGTCGCATCTGATCCACGTGACGTTTCATCTGGTTACC 540 consensus_3390#1 TGTCCTGTTGTNGTCTAGGGTTCGT----------------------------------- 182 *********** ********** ** consensus_3390#0 ATTGCAGTTGATGGAGTAGT 560 consensus_3390#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||