These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAAATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACAAAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATATTAATATAACAAGAATTACCATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAAAAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTAGGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGAACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG] [+] EMBL BM614474 [CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAAATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACAAAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATATTAATATAACAAGAATTACCATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAAAAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTAGGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGAACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG] consensusID : consensus_3393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGAACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACCGCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAATCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATGATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAAA] [-] EMBL AGA280557 [GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGAACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACCGCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAATCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATGATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAAA] consensusID : consensus_3393#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CCGGGTAATTCTTGTTATATTAATATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC] [+] EMBL BM638993 [CCGGGTAATTCTTGTTATATTAATATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3393#0 CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAA 60 consensus_3393#2 ------------------------------------------------------------ consensus_3393#1 ------------------------------------------------------------ consensus_3393#0 ATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACA 120 consensus_3393#2 ------------------------------------------------------------ consensus_3393#1 ------------GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGA 48 consensus_3393#0 AAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATA-TTAATATAACAA 179 consensus_3393#2 ----------------------------------------CCGGGTAATTCTTGTTATA- 19 consensus_3393#1 ACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAAT 108 * * * * consensus_3393#0 GAATTACCATCATCCCCCTTTGCTCATTG--TATGCCACCGCGTGTATTGAATACGCTTT 237 consensus_3393#2 ---TTAATATCATCCCCCTTTGCTCATTG--TATGCCACCGCGTGTATTGAATACGCTTT 74 consensus_3393#1 CCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAAT 168 *** * * * * ** * ** * *** * ** * * * consensus_3393#0 CGCAAAGCATCAGGCTGCTGTTAGTAGAA----TAATGA------TAATAATAATAATGC 287 consensus_3393#2 CGCAAAGCATCAGGCTGCTGTTAGTAGAA----TAATGA------TAATAATAATAATGC 124 consensus_3393#1 CTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACC 228 * * * ** * * * *** ** * * * * * * * consensus_3393#0 ACACAGATATTGGAA-----ATTACGGAAGCAGTGTGATG------------GATGAAAA 330 consensus_3393#2 ACACAGATATTGGAA-----ATTACGGAAGCAGTGTGATG------------GATGAAAA 167 consensus_3393#1 GCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAA 288 * * ** ** ** ** ** ****** ** ***** consensus_3393#0 TCGAACAAA----ATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAA 386 consensus_3393#2 TCGAACAAA----ATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC---- 219 consensus_3393#1 TCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATG 348 ** * **** * **** * * * * * *** *** ** * consensus_3393#0 AAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTA 446 consensus_3393#2 ------------------------------------------------------------ consensus_3393#1 ATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAA 408 consensus_3393#0 GGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTG 506 consensus_3393#2 ------------------------------------------------------------ consensus_3393#1 A----------------------------------------------------------- 409 consensus_3393#0 AGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGA 566 consensus_3393#2 ------------------------------------------------------------ consensus_3393#1 ------------------------------------------------------------ consensus_3393#0 ACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG 621 consensus_3393#2 ------------------------------------------------------- consensus_3393#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||