These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence [CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTACTAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTGCATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTATCGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCTACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCAACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTAAAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTTTTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAATTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTAAGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAAGCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAAAAAAAAGAAAACCCCTTTGTGATGGAGGTGATTACACAAAACACATCAAATGTTTGAAAACGATATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAAATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTAAAAA] [-] EMBL AGA280613 [CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTACTAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTGCATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTATCGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCTACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCAACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTAAAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATT ] [+] EMBL BX624387 [ ATGCATTGAGCAAAACTTAAAGCTAATTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTTTTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAATTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTAAGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAAGCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAAAAAAAAGAAAACCCCTTTGTGATGGAGGTGATTACACAAAACACATCAAATGTTTGAAAACGATATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAAATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTAAAAA] consensusID : consensus_3400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [CAGAATCGGCACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAGTGCTTTGANAACGACTATTNTGGCCGA] [+] EMBL BX466320 [CAGAATCGGCACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGGAGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAAGAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCTAAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAGTGCTTTGANAACGACTATTNTGGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3400#0 CCTGCCTGTCTACCCCATTCGGAGTGAAAAACACAATGTTTTCTTACAAACAAGATTTAC 60 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 TAAAAATAGCGTGTAATCTATATTGAATTGTAGCCTCTCCTAAGTAATTTTCGTGTGTTG 120 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 CATTACATCATCATGCATTTTAAACTGTTGCTTTTGGAGGAAGAGAATGGTCTTAATTAT 180 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 CGTTATACGATACATATGATTGCTGGAATTTCACCACACTGAGTTGAAACGTGTGCTGCT 240 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 ACTACTAGCAGTGTAACTTATCATTAAAGGGGCACAACTGAACATTGCAAGCTGCTTCCA 300 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 ACATGCATTTTAAGCAAATATTATACAACACATCGCAAAAAATGCATTGAGCAAAACTTA 360 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 AAGCTAACTTTTGTTTGATTCTCATTTAGTATTCATTGAAATTAACAATTGTGCATTTTT 420 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 TTTTAAATTAAGTTTGTTTCATTTATGCAGAATTCACAGAAGTTTTTTTTAGTACCCGAA 480 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 TTGATTTCATATTGCTGACCATTCACCGACACAGTGTGTGAGGTATCATTGTGTGGATTA 540 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 AGGCTACTCTCGAAAAGAAAAGTGGAACAAAAAGGTCGTCGCGGTGTAGCTAATGTTGAA 600 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 GCATACAAATTAGATTCTAGTACTCAACTCCTGCGTGTGTCGTACGGTAGATTATGGTGG 660 consensus_3400#1 ----------CAGAATCGG---CACGAGGCCTNTATGTGTCGTACGGTAGATTATGGTGG 47 *** ** * * * *** ************************* consensus_3400#0 AGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAA 720 consensus_3400#1 AGATGGTGCCGTGTAGTGCGCAGAACCAGAGAACAAAAATATTTACGAAGGGTCAGTTAA 107 ************************************************************ consensus_3400#0 GAAGACGAGGAAAACAAAAAGAAACCAG-TTTAGTGTGTGAAAACGTTATATACAAAGCT 779 consensus_3400#1 GAAGACGAGGAAAACAAAAAGAAACCAGGTTTAGTGTGTGAAAACGTTATATACAAAGCT 167 **************************** ******************************* consensus_3400#0 AAAA-AAAAAAGAAAACCCCTTTG--TGATGGAGGTGATTACACA-AAACACATCAAATG 835 consensus_3400#1 AAAACAAAAAAGAAAACCCCTCTTGCTGATGGAGGTGATTACACACAAACACATCAAGAG 227 **** **************** * ******************* *********** * consensus_3400#0 T---TTGAAAACGA-TATTTTGGCCGAAGCAAAACCATGTGTGTGAGTGCATATGGCAAA 891 consensus_3400#1 TGCTTTGANAACGACTATTNTGGCCGA--------------------------------- 254 * **** ***** **** ******* consensus_3400#0 ATGGAACCAGTTATTAGGCTTAAAAAAGGAATACAGAGAGGAGACGTAATATGCAAAGTA 951 consensus_3400#1 ------------------------------------------------------------ consensus_3400#0 AAAA 955 consensus_3400#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||