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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1037 fasta sequence
[CAGAATCGCGCACGAGGCAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTAATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAACTATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTATACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCTCGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTTACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATCTCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCCAAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTGAAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNATTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC]
[+] EMBL BX467433 [CAGAATCGCGCACGAGGCAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTAATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAACTATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTATACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCTCGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTTACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATCTCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCCAAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTGAAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNATTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC]
consensusID : consensus_3401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 797 fasta sequence
[CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAGATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTTTGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATTTGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTTTCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTC]
[+] EMBL BM648914 [CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAGATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTTTGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATTTGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTTTCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATACTAACGCATATGC ]
[+] EMBL BM619848 [ ccGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTATCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTT AATATTAGTTTACAATACAGCACGG ACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3401#0 ------------------------------------------------------------
consensus_3401#1 CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAG 60
consensus_3401#0 ------------------------------------------------------------
consensus_3401#1 ATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTT 120
consensus_3401#0 ------------------------------------------------------------
consensus_3401#1 TGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATT 180
consensus_3401#0 ------------------------------------------------------------
consensus_3401#1 TGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTT 240
consensus_3401#0 -------------------------------CAGAATCGCGCACGAG--GCAAAATAAAT 27
consensus_3401#1 TCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAAT 300
** * ** * **********
consensus_3401#0 TGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTA 87
consensus_3401#1 TGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTA 360
*********************************************** ************
consensus_3401#0 TACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATT 147
consensus_3401#1 TACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATT 420
************************************************************
consensus_3401#0 ACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAA 207
consensus_3401#1 ACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAA 480
************************************************************
consensus_3401#0 TCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGC 267
consensus_3401#1 TCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGC 540
********************** *************************************
consensus_3401#0 GGAAACGATTTTTTTT--AATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATAC 325
consensus_3401#1 GGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATAC 600
**************** ********* ********************************
consensus_3401#0 TCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATA 385
consensus_3401#1 TCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATA 660
*********************************************** ************
consensus_3401#0 CTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACA--A 443
consensus_3401#1 CTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAA 720
***************************************** *************** *
consensus_3401#0 ACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTT 503
consensus_3401#1 ACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTT 780
************************************************************
consensus_3401#0 TCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAAC 563
consensus_3401#1 TCTTTACTTTCCTAGTC------------------------------------------- 797
*****************
consensus_3401#0 TATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTA 623
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 TACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCT 683
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 CGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTT 743
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 ACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATC 803
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 TCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCC 863
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 AAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTG 923
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 AAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNA 983
consensus_3401#1 ------------------------------------------------------------
consensus_3401#0 TTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC 1037
consensus_3401#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||