These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1037 fasta sequence [CAGAATCGCGCACGAGGCAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTAATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAACTATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTATACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCTCGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTTACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATCTCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCCAAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTGAAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNATTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC] [+] EMBL BX467433 [CAGAATCGCGCACGAGGCAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTAATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAACTATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTATACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCTCGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTTACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATCTCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCCAAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTGAAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNATTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC] consensusID : consensus_3401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 797 fasta sequence [CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAGATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTTTGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATTTGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTTTCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTC] [+] EMBL BM648914 [CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAGATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTTTGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATTTGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTTTCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATACTAACGCATATGC ] [+] EMBL BM619848 [ ccGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTATCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAATTGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTATACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATTACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAATCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGCGGAAACGATTTTTTT AATATTAGTTTACAATACAGCACGG ACGTTCGAAAATATACTCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATACTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAAACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTTTCTTTACTTTCCTAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3401#0 ------------------------------------------------------------ consensus_3401#1 CCGAATACTTCTCTTTTCGTTGGTCTGTGGTTACTTTTTATTGCAAGAAGTATCTCTCAG 60 consensus_3401#0 ------------------------------------------------------------ consensus_3401#1 ATTTTTTTATTTTTGTAATTGTATATTTATGTGTATGTACATATTATTAGTTTTATTTTT 120 consensus_3401#0 ------------------------------------------------------------ consensus_3401#1 TGAATAAGTACTATATTTGAGTTCACAAATTATAAATAAATTAAACATTCATAAGAAATT 180 consensus_3401#0 ------------------------------------------------------------ consensus_3401#1 TGAAAAAGCTGTAGGGAGGCAACAAGCATCGTACGCTGTTTTATTGAATTATTCAAGCTT 240 consensus_3401#0 -------------------------------CAGAATCGCGCACGAG--GCAAAATAAAT 27 consensus_3401#1 TCAATGACCGATGGATCAATCCGTAGACACAGGAGATGGAAAACAACTTACAAAATAAAT 300 ** * ** * ********** consensus_3401#0 TGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGATAATGAAACAGTA 87 consensus_3401#1 TGTTTTGCGTCTTCCGGTGTCTGATCTATCGCTTGAAGGAAGCTTGACAATGAAACAGTA 360 *********************************************** ************ consensus_3401#0 TACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATT 147 consensus_3401#1 TACAAGGTTGTGCAATTGAATAGGAACACGAATGAATGACCTCAGAAGGGATGTTGTATT 420 ************************************************************ consensus_3401#0 ACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAA 207 consensus_3401#1 ACATTGTTCTTTTACGTTGTAAAAAAATAAGCACGATTTATAATGCTATCTTAAGGGAAA 480 ************************************************************ consensus_3401#0 TCGTTTCCAGAGCTTAAACCATTATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGC 267 consensus_3401#1 TCGTTTCCAGAGCTTAAACCATCATATTAACCATAAATGTGTTGATTGTTCGGTTTAGGC 540 ********************** ************************************* consensus_3401#0 GGAAACGATTTTTTTT--AATATTAGTTTACAATACAGCACGGAACGTTCGAAAATATAC 325 consensus_3401#1 GGAAACGATTTTTTTTTAAATATTAGTCTACAATACAGCACGGAACGTTCGAAAATATAC 600 **************** ********* ******************************** consensus_3401#0 TCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAAAAGTGATCTCATA 385 consensus_3401#1 TCTTAACATTAAAGTTAGACCAGATCTGCAACATTCGCATGTTGGAACAGTGATCTCATA 660 *********************************************** ************ consensus_3401#0 CTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACACACAGACACACACACA--A 443 consensus_3401#1 CTAACGCATATGCAAGAAGTAACGTTGTTTTCACGGATACAGACAGACACACACACACAA 720 ***************************************** *************** * consensus_3401#0 ACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTT 503 consensus_3401#1 ACACTTGTGATAATGCGTTAGTTAATGATAAATGTTTTTAGCACAGGCGTTTCTCTGCTT 780 ************************************************************ consensus_3401#0 TCTTTACTTTCCTAGTCTTTTTCATTATTCTTTTATTTTCTCAACGAATGTGCTTCAAAC 563 consensus_3401#1 TCTTTACTTTCCTAGTC------------------------------------------- 797 ***************** consensus_3401#0 TATAAAAAGAATCCCACATCGTCGAGCGGGTATTTGTATGATATAATAATTCTTCGTCTA 623 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 TACGCCTAAGTATGATTTAAGGAGGAGCAAGCTAACAGAACACTAGGTATGTAACTTTCT 683 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 CGTGCCAAAAATCCGAGAAGTTGGAAAAATGGGTTGTAACANTTCCGGAAAAACCATTTT 743 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 ACGTTTTATTGATGCCGAAGGGTTGCGCACAACCAAAAGGCGCACGATTTGACTCTGATC 803 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 TCGAAGTTCACACGGGATAAATCCAAGTCGTTCCCCTTTTCTGCTTATTCGGAAAGCCCC 863 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 AAANGCACTTTGGACACAACACTTATTCCCTGGTCCGGGAAAACCAAACATTAAGGGCTG 923 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 AAACACACCCACTTTTCCGGTTACCATANCTCAAATAGCCAAAAATTGGGCCACTCATNA 983 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 TTACTCTTAAAANANCCCTCTTTGGAAGAACCACANTCACAACAAACAAAGCAC 1037 consensus_3401#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||