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Anopheles gambiae
cluster # 341 cluster # 341       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_341#0 length = 718 sequences # 1  
consensus_341#1 length = 649 sequences # 1  

consensusID : consensus_341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 718
fasta sequence
                              [CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG]

[+] EMBL BX621821             [CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG]


>consensus_341#0 CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAA CAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAAC AAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATC ACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGG CACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGC TCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTG ATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGAT CACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGC CTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTC AGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGC AAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTG GAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG



consensusID : consensus_341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG]

[+] EMBL BX613360             [CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG]


>consensus_341#1 CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTC GAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCAT CATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTT TACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGA CAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGA GCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCT GGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAA GATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGC GGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACT GCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACA ACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_341#0      CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAA 60
consensus_341#1      -----------------------------------------------------CGCCTAG 7
                                                                           *** * 

consensus_341#0      CAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAAC 120
consensus_341#1      ATGAGTCTGTGAAGGAGGAAGCGGA--CGG-TGTGCAC-AACACGCTCGCCATCTTCGAG 63
                       * ** **     * ***  * **  *** ** ** * ** * **    *  *    * 

consensus_341#0      AAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATC 180
consensus_341#1      AATCTG-ATCGAGGTGAAG-GCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATC 121
                     ** *** *  *  * ***  ** * *  * *  *   *   **  **      *  ****

consensus_341#0      ACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGG 240
consensus_341#1      ATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGC-GCCTGCTGTCGAAGTT 180
                     *      ***   *   *  *  * * *    ** ** ***** * * **   * *    

consensus_341#0      CAC-GATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTG 299
consensus_341#1      TACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGA 240
                      ** **       *  * * *** * **    * *****    *    ***     *   

consensus_341#0      CTCGGCGCTAATGGCGAA--GGAGAATCGGG-AAAAGTTCCTCAAAGGCGAGGGCTTGCA 356
consensus_341#1      CAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGA 300
                     *  ** *  *  *  * *  *    ****   *  ** * * ***    **** *  * *

consensus_341#0      GCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGT---CGCTGAAGGT 413
consensus_341#1      GCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCT 360
                     ** *    **   *** **  ** ****  ******  **      *   * *** ** *

consensus_341#0      GCTGGATCACGCGATGGCCGGA-----CCGGACGGGCGCGACAATTGCAACAAGTTCGTC 468
consensus_341#1      GGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAA-GCAGCGCGTCC-TA 418
                     * * *** *** ***   **       * * ****  * *   *  *** *  ** * * 

consensus_341#0      GACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAG 528
consensus_341#1      AAGATTCTGAACCTTCACAACGG---------GTCGATGAAAATG---ATACGCAACGTG 466
                      * *****   *** * **             **  ***** * *   * *** * *  *

consensus_341#0      AAGCGCCTGCTCAGCACGGACGAGCACGAGGA-GCACATCGTCTCCATCATTGCCAGCAT 587
consensus_341#1      ATGCGCGAGT---ACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAG 523
                     * ****  *     * *** * *    *  ** **  *   *  * **    ** * ** 

consensus_341#0      GCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGA 647
consensus_341#1      G---AGCAGTCCCACATACT-GCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTA-GC 578
                     *    ***    ** *   * ***** *      * * * * **       **   * * 

consensus_341#0      TTTCGAGAAGGTGGAACGACTGATGGA-ACTGCACCGCAAGTATTTGGACAAGGTGGAAG 706
consensus_341#1      TCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAAC 638
                     * ****  *       *     * *   * *  **** ** *   * ** ** *   ** 

consensus_341#0      CGATGGACCGTG- 718
consensus_341#1      CATT--TCCATGG 649
                     *  *   ** ** 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)