These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG] [+] EMBL BX621821 [CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAACAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAACAAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATCACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGGCACGATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTGCTCGGCGCTAATGGCGAAGGAGAATCGGGAAAAGTTCCTCAAAGGCGAGGGCTTGCAGCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGTCGCTGAAGGTGCTGGATCACGCGATGGCCGGACCGGACGGGCGCGACAATTGCAACAAGTTCGTCGACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAGAAGCGCCTGCTCAGCACGGACGAGCACGAGGAGCACATCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTG] consensusID : consensus_341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG] [+] EMBL BX613360 [CGCCTAGATGAGTCTGTGAAGGAGGAAGCGGACGGTGTGCACAACACGCTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATCATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGACAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGAGCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCTGGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAAGCAGCGCGTCCTAAAGATTCTGAACCTTCACAACGGGTCGATGAAAATGATACGCAACGTGATGCGCGAGTACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAGGAGCAGTCCCACATACTGCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTAGCTCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAACCATTTCCATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_341#0 CTCGCCATCTTCGAGAATCTGATCGAGGTGAAGGCCGACATTGCGAAGGAAGTGGCCGAA 60 consensus_341#1 -----------------------------------------------------CGCCTAG 7 *** * consensus_341#0 CAGGGTTTGCTGCAGTGGATCCTGAAGCGGCTGCGCGCCAAGATGCCGTTCGACGCGAAC 120 consensus_341#1 ATGAGTCTGTGAAGGAGGAAGCGGA--CGG-TGTGCAC-AACACGCTCGCCATCTTCGAG 63 * ** ** * *** * ** *** ** ** * ** * ** * * * consensus_341#0 AAGCTGTACTGCAGCGAAATGCTGTCGATACTGGTGCAGGACACGAACGCGAACCGCATC 180 consensus_341#1 AATCTG-ATCGAGGTGAAG-GCCGACATTGCGCGACAACTGCAACAAGTTCGTCTCCATC 121 ** *** * * * *** ** * * * * * * ** ** * **** consensus_341#0 ACGCTGGGCAACATAGACGGCATCGATGTGCTGCTGCAGCAGCTGGCCGCCTACAAGCGG 240 consensus_341#1 ATTGCCAGCATGCTGCGCAACTGCAAAGGTTCGCAGCGGCAGC-GCCTGCTGTCGAAGTT 180 * *** * * * * * * ** ** ***** * * ** * * consensus_341#0 CAC-GATCCGAGCTCGGCGGAGGAGCAAGAGTTCATGGAGAACCTGTTCAACAGCCTCTG 299 consensus_341#1 TACCGAGAACGATTTCGAGAAGGTGGAACGACTGATGGAACTGCACCGCAAGTATTTGGA 240 ** ** * * * *** * ** * ***** * *** * consensus_341#0 CTCGGCGCTAATGGCGAA--GGAGAATCGGG-AAAAGTTCCTCAAAGGCGAGGGCTTGCA 356 consensus_341#1 CAAGGTGGAAGCGATGGACCGTGAGATCGATCAGGAGCTGCGCAACAATGAGGACGAGGA 300 * ** * * * * * * **** * ** * * *** **** * * * consensus_341#0 GCTGATGAACCTGATGCTGCGCGAGAAGAAGCTCTCGCGCAACGGGT---CGCTGAAGGT 413 consensus_341#1 GCAGGACGACGACATGGTGTACGTGAAGCGGCTCTCCGGCGGTCTCTTCACACTGCAGCT 360 ** * ** *** ** ** **** ****** ** * * *** ** * consensus_341#0 GCTGGATCACGCGATGGCCGGA-----CCGGACGGGCGCGACAATTGCAACAAGTTCGTC 468 consensus_341#1 GGTCGATTACGTGATCCTCGAGATCAGCTGCACGGATGTGGTGAA-GCAGCGCGTCC-TA 418 * * *** *** *** ** * * **** * * * *** * ** * * consensus_341#0 GACATTCTCGGCCTGCGCACGATCTTTCCGCTGTTCATGAAGACGCCGAAACGGAGCAAG 528 consensus_341#1 AAGATTCTGAACCTTCACAACGG---------GTCGATGAAAATG---ATACGCAACGTG 466 * ***** *** * ** ** ***** * * * *** * * * consensus_341#0 AAGCGCCTGCTCAGCACGGACGAGCACGAGGA-GCACATCGTCTCCATCATTGCCAGCAT 587 consensus_341#1 ATGCGCGAGT---ACGCGGGCAATTTGGGCGACGCTAACGATAGCGATTGGCGCGAACAG 523 * **** * * *** * * * ** ** * * * ** ** * ** consensus_341#0 GCTGCGCAACTGCAAAGGTTCGCAGCGGCAGCGCCTGCTGTCGAAGTTTACCGAGAACGA 647 consensus_341#1 G---AGCAGTCCCACATACT-GCAGCTGATTGATCGGTTCTAGAGAGAGGTCGGTTA-GC 578 * *** ** * * ***** * * * * * ** ** * * consensus_341#0 TTTCGAGAAGGTGGAACGACTGATGGA-ACTGCACCGCAAGTATTTGGACAAGGTGGAAG 706 consensus_341#1 TCTCGATTATAAAACCCTTACAACGTTCAATAAACCGGAAATGACTCGAAAATGGAAAAC 638 * **** * * * * * * **** ** * * ** ** * ** consensus_341#0 CGATGGACCGTG- 718 consensus_341#1 CATT--TCCATGG 649 * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||