These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [CCGCCCACGCGTCCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGC-CCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGCGGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACCTCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC] [+] EMBL BM614202 [CCGCCCACGCGTCCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGC CCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTG ] [+] EMBL BM575351 [ ccggcatgtATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGCACCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAGCGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCTGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGCGGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACCTCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC] consensusID : consensus_3443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGTTGCCTGTACCGTTTGCACATTTTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGTGCGGGCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTTTCTGTGTGCTGGCCCGCAGAGTAGC] [+] EMBL AGA281185 [TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGTTGCCTGTACCGTTTGCACATTTTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGTGCGGGCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTTTCTGTGTGCTGGCCCGCAGAGTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3443#0 --CCGCCCACGCGT-CCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCG 57 consensus_3443#1 TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCG 60 * * * * * ** ****************************************** consensus_3443#0 CGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATA 117 consensus_3443#1 CGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATA 120 ************************************************************ consensus_3443#0 CTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGT 177 consensus_3443#1 CTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGT-T 179 ******************************************* * * ** * * * consensus_3443#0 GAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGT 237 consensus_3443#1 GCCTGTACCGTTTGCACATT--TTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGT 237 * ** * ** * ** * * * * * * ** consensus_3443#0 GCTAAATAGTGTGTTGTGCA-AATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTG 296 consensus_3443#1 GCGG----GCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTT---TCTGTGTGCTG 290 ** * * ******* *** * * * *** * ** * * * ** consensus_3443#0 ACGGACGCAATTCCCGGGAACGTGTGCCCTGAATGAATAGAAACATGAAGCGGCAGCTGG 356 consensus_3443#1 GCCCGCAGAGTAGC---------------------------------------------- 304 * * * * * consensus_3443#0 AAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATG 416 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 CGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACC 476 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 TGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGG 536 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 AGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCA 596 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 AGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGC 656 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 GGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACC 716 consensus_3443#1 ------------------------------------------------------------ consensus_3443#0 TCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC 772 consensus_3443#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||