These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [CAGAATCCCNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGCGCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCTTTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGCAAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCAATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTGTACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTGTTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAACTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA] [+] EMBL BX469227 [CAGAATCCCNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGCGCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCTTTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGCAAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCAATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTGTACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTGTTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAACTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA] [-] EMBL AGA282817 [ TCCTTT TATAATTGTAA TGTTTTT TTCTCTCC GAATTTTATTGATTGTTTTAACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGA ] consensusID : consensus_3444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTTTCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACATCGAGGGGGTTTATAAAGCGGAAGAAAGTGTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT] [+] EMBL AGA281193 [GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTTTCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACATCGAGGGGGTTTATAAAGCGGAAGAAAGTGTAAACCAGTACAACATCACTCTACAACAAAACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAGATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3444#0 ------------------------------------------------------------ consensus_3444#1 GGGCAATGCAGCCGGCATGGGCTACAACGGGATGACACCAGCGGTCGGGACCGTTGCCTT 60 consensus_3444#0 ----------------------------------------------------CAGAATCC 8 consensus_3444#1 TCCCTTTCTACGCTACGGCTTGAACCTGGACCGGAAGTAATCGGACACTCACTACTAACA 120 * * * consensus_3444#0 CNACGAGTGATTATAAAGCGGAAGAAAGTGCTAAACCAGTACAACATCACTCTACAACAA 68 consensus_3444#1 TCGAGGGGGTTTATAAAGCGGAAGAAAGTG-TAAACCAGTACAACATCACTCTACAACAA 179 * * * ******************** ***************************** consensus_3444#0 AACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAGGAGTAATTAG 128 consensus_3444#1 AACTGCAATGATCATCACCATCGGATAATGTAATGCGACGGGCAAAATAAGAGTAATTAG 239 ************************************************* ********** consensus_3444#0 ATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGTTTTGATGC 188 consensus_3444#1 ATCTTCATATTAAAAATGAAAAAGACAAGAGAAAAAGAATAATATCTCCTGT-------- 291 **************************************************** consensus_3444#0 GCACTAGCGTTCGATTAACGGTATGTGGTAAAAAAAAGAACTGGCATGCAAAGGAACTCT 248 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 TTTTTTTCGTTGAACGTAAATTATCGCCACTGGGAAGATGACTGTTGTGCACGGGGTTGC 308 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 AAGCAGAAGGGAGCCACACAGAGAGCAAAAATTCACATTACACAATTATTATGTAGTTCA 368 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 ATTATCTTTAGAATGTCGAAATACTAAAATTGATTTATACATCGCTAGGTTCAAGTACTG 428 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 TACTGTCCTTTGTATAATTGTAAGTGTTTTTGTTCTCTCCGGTATTTTGTTGATTGTTTT 488 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 AACACAACCAAGCCCGTCCTCCGAATTGTAGCAGTAGCAAGCTGCAGACCAGGGAGAGTG 548 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 TTGAATAGCAGGATTTGAACAATAATCGTTGCGGACAGATAGTAGATGCAGTCANGTAAA 608 consensus_3444#1 ------------------------------------------------------------ consensus_3444#0 CTTAGAAAAGGAGGAAGGAACTAAGGCGAAAAACATACACA 649 consensus_3444#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||