These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence [GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACA-CACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCAT] [+] EMBL CNS08KXE [GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACA CACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCAT] [+] EMBL BM611668 [ ccgTGTGTGTGTGCGCGCACTGAAGGCGTCCTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCGCGTGTGCAAATCGAGTGATCCAAAAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATGGTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACAGCACGTGCGTGTGTATTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACTGCGAAGAGGATCGCAAAAAGAGCGTTAACGAGGTCTTCGTACAGCAAGCATCAGGGGCAGGAGTCATTGTAGTTGATGGTGC ] consensusID : consensus_3448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGCGGACGCGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGACCGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCTGTTTCTGAATGATGAGCTGCACGTCAA] [+] EMBL BM581288 [CCGCGGACGCGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATCGATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCGCGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTCTACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGAAAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGGCGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAAGATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAATCACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGATCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCACAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGACCGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCTGTTTCTGAATGATGAGCTGCACGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3448#0 GACCGGGCGCGAACTTGTTGTTTGTATCGCTGCTGTGTGTGTGCGCGCACTGAAGGCGTC 60 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 CTGTTGTGTGGAAGCACATTGTTGCCCCCTTGGCTGCTCTGGAAGCAACATATAATTTCG 120 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 CGTGTGCAAATCGAGTGATCCAAGAAAGCATCGATTTAAAGTCTATCGGATTCCTGCATG 180 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 GTTGCCCCCGTTTCGTACAGCGTTAACATTCACGGCAAGCGCGACACACGTGCGTGTGTA 240 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 TTGGTGTGTCCAAAAACGGGCCCAGGAAAGGATCGAAAAGAACGAACGAAGAACACGACT 300 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 GCGAAGAGGATCGCAAAAAGAGCGTTAACGAGTTCTTCGTACAGCAAGCATCAGGGGCAG 360 consensus_3448#1 ------------------------------------------------------------ consensus_3448#0 GAGTCATTGTAGTTGATGGTGCGAAGTAAAATCGAATGACCAACAGCGTAAAAGCCCATC 420 consensus_3448#1 ---------CCGCGGACG-CGTGGGGTAAAATCGAATGACCAACAGCGTAAAAGCCCATC 50 * ** * * * *********************************** consensus_3448#0 GATCT--ATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCG 478 consensus_3448#1 GATCTCTATCCACTGTTTACTTGGTGTACGTCTTCGGTTACCTTCGGTTGGCGTAACGCG 110 ***** ***************************************************** consensus_3448#0 CGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTC 538 consensus_3448#1 CGCAGTCATTTTGTAGGGAGCTACTGTTTTCCGGCCCGAAAGAACACATCAGCTTGTGTC 170 ************************************************************ consensus_3448#0 TACCGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGA 598 consensus_3448#1 TACAGCCACCAACATGAGTAGTGTCGCCAAGCCTGATGAGAAAGCGGTCGACATTCCGGA 230 *** ******************************************************** consensus_3448#0 AAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGG 658 consensus_3448#1 AAAATTGTACGATGCCGGCACCAAGCGGACGTACCGCCGGATGCGGTTCTTCGGCAAGGG 290 ************************************************************ consensus_3448#0 CGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAA 718 consensus_3448#1 CGGGTTCGCCAAGTGCTACGAGATAGTGGACGTGGCCACGAACGAGGTATTTGCCGGGAA 350 ************************************************************ consensus_3448#0 GATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAAT 778 consensus_3448#1 GATTGTCTCAAAGAAGCTGATGATGAAGCACAACCAGAAGGAGAAAATGACGCAGGAAAT 410 ************************************************************ consensus_3448#0 CACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGATGA 838 consensus_3448#1 CACGATTCATCGTTCGTTGAACCACAAAAACATCGTCGGCTTCCACAGCTTCTTCGACGA 470 ********************************************************* ** consensus_3448#0 TCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCA 898 consensus_3448#1 TCCGCTCAACATTTACATCGTCCTTGAGCTGTGCAAGAAGCGGTCCATGATGGAGCTGCA 530 ************************************************************ consensus_3448#0 CAAGCGTCGAAAGATCAT------------------------------------------ 916 consensus_3448#1 CAAGCGTCGAAAGATCATCACAGACTACGAGTGCCGGTACTACATGCATCAGGTAATGAC 590 ****************** consensus_3448#0 ------------------------------------------------------------ consensus_3448#1 CGGTGTGAAATATCTGCACGACAAGCACATCATCCATCGGGACTTGAAGCTCGGCAATCT 650 consensus_3448#0 --------------------------- consensus_3448#1 GTTTCTGAATGATGAGCTGCACGTCAA 677 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||