These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA] [+] EMBL AGA282945 [AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGT ] [+] EMBL BX467593 [ ggccaagAATCGGCACGAG GATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA] consensusID : consensus_3452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA] [-] EMBL AGA281335 [TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3452#0 AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAA 60 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 ACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACT 120 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 ATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTC 180 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 AAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAAT 240 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 AGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATG 300 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 GAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTAC 360 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 GTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACT 420 consensus_3452#1 ------------------------------------------------------------ consensus_3452#0 ACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 480 consensus_3452#1 ---------TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 51 **** ********************************************* consensus_3452#0 GCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGA 540 consensus_3452#1 GCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGA 111 *********************** * ********************************** consensus_3452#0 GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAG 600 consensus_3452#1 GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGG--AGGATGGCAGACAG 169 ******************************************** ************* consensus_3452#0 GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 660 consensus_3452#1 GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 229 ************************************************************ consensus_3452#0 GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAAC 720 consensus_3452#1 GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAG-CAAC 288 ******************************************************* **** consensus_3452#0 AAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTG 780 consensus_3452#1 AA-TGCAT-CATCCTCCCGTAGCCGCCT-TGTCGTCGACGTAGCTTCCTGTCGAACTTAA 345 ** ***** ****** ** *** * ** * * * * * consensus_3452#0 GTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAA 840 consensus_3452#1 GCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAA 405 * ** *** * * * * * *** **** * *** * ** consensus_3452#0 AACCTGGTANAGTACACTTGACTNAACCTANAGTAAA----------------------- 877 consensus_3452#1 AGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGT 465 * * * * * ** * ** * consensus_3452#0 ------------------------------------------------------------ consensus_3452#1 ACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCC 525 consensus_3452#0 ------------------------------------------------------------ consensus_3452#1 AGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAG 585 consensus_3452#0 ------------------------------------------------------------ consensus_3452#1 GCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAG 645 consensus_3452#0 ------------------------------------------------------------ consensus_3452#1 TAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATG 705 consensus_3452#0 ------------------------------ consensus_3452#1 ATTGATTTCAGAATAAAAAAAAAAAAAAAA 735 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||