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Anopheles gambiae
cluster # 3452 cluster # 3452       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3452#0 length = 877 sequences # 2  
consensus_3452#1 length = 735 sequences # 1  

consensusID : consensus_3452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 877
fasta sequence
                              [AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA]

[+] EMBL AGA282945            [AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX467593             [                                                                                                                                                                      ggccaagAATCGGCACGAG GATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA]


>consensus_3452#0 AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAA ACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACT ATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTC AAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAAT AGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATG GAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTAC GTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACT ACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA GCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGA GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAG GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAAC AAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTG GTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAA AACCTGGTANAGTACACTTGACTNAACCTANAGTAAA



consensusID : consensus_3452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence
                              [TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA]

[-] EMBL AGA281335            [TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA]


>consensus_3452#1 TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAG AGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATG TTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAA GGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTA CTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCC TCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGC GTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTC CCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCC TAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACAC ATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACT AGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTA TTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATA AAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3452#0      AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAA 60
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      ACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACT 120
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      ATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTC 180
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      AAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAAT 240
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      AGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATG 300
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      GAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTAC 360
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      GTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACT 420
consensus_3452#1      ------------------------------------------------------------
                                                                                  

consensus_3452#0      ACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 480
consensus_3452#1      ---------TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 51
                                **** *********************************************

consensus_3452#0      GCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGA 540
consensus_3452#1      GCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGA 111
                      *********************** * **********************************

consensus_3452#0      GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAG 600
consensus_3452#1      GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGG--AGGATGGCAGACAG 169
                      ********************************************   *************

consensus_3452#0      GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 660
consensus_3452#1      GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 229
                      ************************************************************

consensus_3452#0      GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAAC 720
consensus_3452#1      GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAG-CAAC 288
                      ******************************************************* ****

consensus_3452#0      AAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTG 780
consensus_3452#1      AA-TGCAT-CATCCTCCCGTAGCCGCCT-TGTCGTCGACGTAGCTTCCTGTCGAACTTAA 345
                      ** ***** ****** **      ***    * **       *      * *   * *  

consensus_3452#0      GTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAA 840
consensus_3452#1      GCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAA 405
                      * **      ***      *   * *  *  *  ***      ****  *  *** * **

consensus_3452#0      AACCTGGTANAGTACACTTGACTNAACCTANAGTAAA----------------------- 877
consensus_3452#1      AGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGT 465
                      *    *    *   * *    **     *    ** *                       

consensus_3452#0      ------------------------------------------------------------
consensus_3452#1      ACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCC 525
                                                                                  

consensus_3452#0      ------------------------------------------------------------
consensus_3452#1      AGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAG 585
                                                                                  

consensus_3452#0      ------------------------------------------------------------
consensus_3452#1      GCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAG 645
                                                                                  

consensus_3452#0      ------------------------------------------------------------
consensus_3452#1      TAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATG 705
                                                                                  

consensus_3452#0      ------------------------------
consensus_3452#1      ATTGATTTCAGAATAAAAAAAAAAAAAAAA 735
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)