These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1334 fasta sequence [CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAATAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCCTAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACATCTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTGGGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGTNGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCAGTAAGGGTGGGTCCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAGTTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATTGTACNNAGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGGAAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACACAGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAAAGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAGGGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAACACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAACAAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCAANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNGCCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCACAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANGACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCANTATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAACCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGACTAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAACGGGNNAACATCACCTC] [+] EMBL AL694598 [CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAATAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCCTAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACATCTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTGGGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGTNGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCAGTAAGGGTGGGTCCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAGTTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATTGTACNNAGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGGAAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACACAGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAAAGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAGGGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAACACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAACAAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCAANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNGCCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCACAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANGACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCANTATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAACCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGACTAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAACGGGNNAACATCACCTC] consensusID : consensus_3466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence [TCTCCGAGGCTAGATTATTTATTTAATGCAAGGATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACGACGGTATTTACCCGGGCCTATTTGACAACTACTTAAGCAAGCATTTTAAATATGCTTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACTGCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGTGTGATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA] [+] EMBL AGA283149 [TCTCCGAGGCTAGATTATTTATTTAATGCAAGGATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACG ] [-] EMBL AGA281557 [ AGGCTAGATTATTTATTTAATGCAA GATACATCTGGGATACCCTCCTCCTACCCTTATCGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACGACGACGGTATTTACCCGGGCCTATTTGACAACTACTTAAGCAAGCATTTTAAATATGCTTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACTGCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGTGTGATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3466#0 CGATGCAAGAATTCCCGCAGGTTANGAGTGGTATCCCATATGTATCTTGCATTTAATAAA 60 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 TAATCTAGCCTCGGAGAGGGGTTGCGGNGAACCAGCAAGCCAAAACCAGATAGTGATCCC 120 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 TAGTCCCCTGCAACGCACATACACCTGCGCCTCCCGCAGAGCGTAAGAGAAAAGCCACAT 180 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 CTGCCCTGTGCTCCTACTTCTGNGATCCTACTTCGGGTCCCTGCACGCAAGTGCAGCTTG 240 consensus_3466#1 ------------------------------------------------TCTCCGAGGCTA 12 ** * consensus_3466#0 GGTTGGTGCTTNAAAGAGGGAGCAGGGTGTTGGTTGTNAACCCCCATATTCCATTATGGT 300 consensus_3466#1 GATTATTTATTTAATGCAAGGATACA-------TCTGGGATACCCTCCTCCTACCCTTAT 65 * ** * ** ** * * * * * *** * * * * * consensus_3466#0 NGNGAGTTATCATGATCAAAATTGCAGCAGCAGTCAGCAAGCAGCAGCAAAGGTATCTCA 360 consensus_3466#1 CGGTTGCTATTATTAACCGCCACAAAGAAAGAGAGAGAGAGCGAGGGCTAGAGCACAACG 125 * * *** ** * * ** * ** ** *** ** * * * * consensus_3466#0 GTAAGGGTGGGT-CCCAAGTATATTTGTNATCTACACGTACTGTATCTTACTAGATTAAG 419 consensus_3466#1 ACGACGGTATTTACCCGGGCCTATTTGACAACTACT-------TAAGCAAGCATTTTAAA 178 * *** * *** * ****** * **** ** * * **** consensus_3466#0 TTGGTATCATACATATTCNTACTGATAANNGATNGACCGGGCCCCCCGGTNGATTNGATT 479 consensus_3466#1 TATGC-TTGTACATGCCCTGATTGGCAGCTTCTTTCACGTGTGTGTTATAAAATCAAACT 237 * * * ***** * * ** * * ** * ** * * consensus_3466#0 GTACNN--AGATATGCTTATGCAAACACGAATTAATTGCATAGNAATTGGACAACCANGG 537 consensus_3466#1 GCATCTTCATACATGGTGCTCTACGCATCTTTTGACTGTTTTGAGATTCGT------GTG 291 * * * * *** * * * ** ** * ** * * *** * * consensus_3466#0 AAGNTCGGTAAATCACGGGGAAATTTTACNTTCCACATGCTCAAGANACNGGGANAACAC 597 consensus_3466#1 ATGATTATTGATTGGTCTGCGTGTTTACATTCCCTCATAAACAAAAAAAA---------- 341 * * * * * * * *** * ** *** *** * * consensus_3466#0 AGGAACAAGAAAAAAAACCNAGNTNGGANAACNACAGGGGAACACGAAAAGAACANAAAA 657 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 AGAGCAGAACGGGGAACTTGCCAGTTNAAGACAAACTACAGCAATGGNNAGGAGACAGAG 717 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 GGGTAAACACACACAACANCNTGGGACATAAAATNACCCGCGAATAACTCCCGGCCTAAC 777 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 ACAATNNAGNCCACAAAAACCCAGCACACAAAAATCCNGAACAACCTACTNGCGATCAAC 837 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 AAAAANCACATCACCCNCGGGCCANCTCAAAAGACTACCGTAAACAAAACCAACACACCA 897 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 ANNAACGCACAACNAAACNGCANGNAAAACAAAGCAGTGCTNACGAGCGACAATNNCCNG 957 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 CCCACCACNACAACNTCNTGAGNACCAATCNCAACGGCCCNACCCCCCNAGNGCGTGNCA 1017 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 CAAACATTGANANATCCTAATACCTAGCNCAACACCANCGCAGACCCAANAATACACANG 1077 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 ACNAATAACAANAACGCCAAATACATGGACCCCACCACCACACCNCCATGGATCACCCAN 1137 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 TATGGCAAAAACCCACACCTGNAGCAAACAAANATNACACAANAGGCCAATGATAGCGAA 1197 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 CCGACAAGCGACACCCNNCAACCNNCAANACAAAGCAAACNGAACAGCAGAAAAANCGAC 1257 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 TAATANAAACNAAAACNTAGCCCCAAATCCAGCATAACATGACACCACAGCAAACCCGAA 1317 consensus_3466#1 ------------------------------------------------------------ consensus_3466#0 CGGGNNAACATCACCTC 1334 consensus_3466#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||