These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 860 fasta sequence [CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCATTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTCTTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACTCGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAATGGAATACGAATTTCCTTACATTCCATAACCTGTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAGTCGTACGCAT--CATCTCCCGTTTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTCGGAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAAGAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAAGGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAGTCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGTTTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATGTTGTAACGTTTGCTAATGGGKCT] [-] EMBL BM583194 [CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCATTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTCTTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACTCGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAATGGAATACGAATTTCCTTACATTCCATAACCTGTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAGTCGTACGCAT CATCTCCCGTTTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTCGG ] [+] EMBL AGA281563 [ ttttttTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAATCGTACGCATCACATCTCCCG TTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCTTTTTTTTTTGTTTCTATCTCGTACTCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTTACAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAAGAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAAGGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAGTCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGTTTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATGTTGTAACGTTTGCTAATGGGKCT] consensusID : consensus_3467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTTTAGGGTAGAAMAGAATACGTTTTACGTTTGTTTTAGATATTTTYATGTTGCTTGTATATTTTTGTGTCTTCTACTGCTTCCTTTGCTCTAAAGAATTAGGGTTTTTAGTGTGCCTTGGCTTTGTTTTTTATTACTTTCAATTATTTACCCATATATTCCACGTTCGCGTTAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAGTAATTATATTATTAGACCCATTAGCAAACGTTACAACATTTAGCAAACAAT] [+] EMBL AGA283154 [GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTTTAGGGTAGAAMAGAATACGTTTTACGTTTGTTTTAGATATTTTYATGTTGCTTGTATATTTTTGTGTCTTCTACTGCTTCCTTTGCTCTAAAGAATTAGGGTTTTTAGTGTGCCTTGGCTTTGTTTTTTATTACTTTCAATTATTTACCCATATATTCCACGTTCGCGTTAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAGTAATTATATTATTAGACCCATTAGCAAACGTTACAACATTTAGCAAACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3467#0 CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCA 60 consensus_3467#1 --GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTT-TAGGGTAGAAMAGAATACGTT 57 ** ** * * ** ** ** * * * * * * *** ** consensus_3467#0 TTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTC 120 consensus_3467#1 TT------ACGTTTGTTTTA-GATATTTTYA----TGTTGCTTGTATAT--TTTTGTGTC 104 ** ** * ****** ** *** * * * *** * * * * ** ** consensus_3467#0 TTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACT 180 consensus_3467#1 TTCTA-CTGCTTCCTTTGCTCTA-----AAGAATTAGGGTTTTTAGTGTGCCTTGGCTTT 158 ** * **** ** * *** * *** * * *** *** * ** * * * consensus_3467#0 CGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAA 240 consensus_3467#1 GTTTTTTATTACTTTCAATTATTTAC-----CCATA--------TATTCCACGTTCGCGT 205 ** * ** **** * *** ** *** * * ** *** ** consensus_3467#0 TGGAATACGAATTTCCTTAC-ATTCCATAAC--CTGTTTACAGTGTACAGTAGAGGCTTT 297 consensus_3467#1 TAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAG---TA 262 * * * ** ** ** ** *** * * *** ** *** ** * consensus_3467#0 ATTGTGTGTATTTCAACAAGTCGTACGCATCATCTCCCGTTTTTTCCCCCCACGTATCGC 357 consensus_3467#1 ATTATAT-TATTAGACCCATTAGCAAACGTTACAACA---TTTAGCAAACAAT------- 311 *** * * **** * * * * * * * * * * *** * * * consensus_3467#0 TTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGC 417 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 GGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACAT 477 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 TTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGA 537 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 TCGCAGAACATTCTTCGCTTGGTTCGGAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAA 597 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 GAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAA 657 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 GGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAG 717 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 TCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGT 777 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 TTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATG 837 consensus_3467#1 ------------------------------------------------------------ consensus_3467#0 TTGTAACGTTTGCTAATGGGKCT 860 consensus_3467#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||