These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACAAAACGGTGAGTTGGCTTTTACAACCCCTAATTTCATAAATATCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAACAAAGCGAAAGAACTATTCTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCAAATTCCACAGTATACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTCGCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCCAAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGTACCGTCGCACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCTGCACGAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCGCTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNACAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACCCGGGGGGCCCGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATGCGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAACTCCCGACACATAACC] [+] EMBL AL930968 [AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACAAAACGGTGAGTTGGCTTTTACAACCCCTAATTTCATAAATATCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAACAAAGCGAAAGAACTATTCTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCAAATTCCACAGTATACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTCGCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCCAAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGTACCGTCGCACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCTGCACGAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCGCTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNACAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACCCGGGGGGCCCGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATGCGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAACTCCCGACACATAACC] consensusID : consensus_3468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [GTAGTGAGCCACCGCCGCTGTATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCAGCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTACATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAGGCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGCGGGTACGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGCAGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCATCGGGTTGGTGCGGATGGGGCTGGTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGAATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCCTTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAATATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCGAGTTGGCTTTTACAACCCCTAATTTCATAAATA] [+] EMBL BX628249 [GTAGTGAGCCACCGCCGCTGTATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCAGCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTACATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAGGCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGCGGGTACGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGCAGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCATCGGGTTGGTGCGGATGGGGCTGGTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGAATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCCTTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAATATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCGAGTTGGCTTTTACAACCCCTAATTTCATAAATA] consensusID : consensus_3468#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAATGCGAGTTGGTTTTTACAACCCATAACTTCATAAATATCCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACCTCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCGAATTCCACAATATACCA] [-] EMBL AGA281569 [TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAATGCGAGTTGGTTTTTACAACCCATAACTTCATAAATATCCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACCTCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCGAATTCCACAATATACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3468#0 ----------AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACA 50 consensus_3468#2 TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTA-ATCAA-AAGTGTTTATTTAAAGACA 58 consensus_3468#1 ----------------------------------------GTAGTGAGCCACCGCCGCTG 20 **** * consensus_3468#0 AAACGGTGAGTTGGCTTTTACAACCCCTA--ATTTCATAAATATCCCC-AACTGTGTGTG 107 consensus_3468#2 AAATG-CGAGTTGGTTTTTACAACCCATA--ACTTCATAAATATCCCCCAACTGTGTGTG 115 consensus_3468#1 TATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCA 80 * ** * ** ** ** * * * * ** * * consensus_3468#0 TCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAA--CAAAGCGAAAGAACTATT 165 consensus_3468#2 TCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACC 175 consensus_3468#1 GCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTAC 140 * * **** ** * ** * * * * ** * consensus_3468#0 CTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCA-AATTCCAC---AGTAT 221 consensus_3468#2 TCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCG---AATTCCAC---AATAT 229 consensus_3468#1 ATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAG 200 * * * * * ** ** *** * * consensus_3468#0 ACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTC 281 consensus_3468#2 ACCA-------------------------------------------------------- 233 consensus_3468#1 GCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGC 260 ** consensus_3468#0 GCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCC 341 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 GGGTA--CGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGC 318 consensus_3468#0 AAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGT-- 399 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 AGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCA-TCGGGTTGGTGCGGATGGGGCTG 377 consensus_3468#0 ---ACCGTCG-CACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCT 455 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 GTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGA 437 consensus_3468#0 GCAC---GAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCG 512 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 ATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCC 497 consensus_3468#0 CTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNA 572 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 TTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAA 557 consensus_3468#0 CAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACC-CGGGGGGCC 631 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 TATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCG 617 consensus_3468#0 CGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATG 691 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 AGTTGGCTTTT---ACAACCCCTAATTTCATAAATA------------------------ 650 consensus_3468#0 CGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAA 751 consensus_3468#2 ------------------------------------------------------------ consensus_3468#1 ------------------------------------------------------------ consensus_3468#0 CTCCCGACACATAACC 767 consensus_3468#2 ---------------- consensus_3468#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||