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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTCAGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCGTGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACAAACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATAGCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTGTTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAGGCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAGGAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATTGGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTACTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAGGATTC]
[+] EMBL BX469578 [GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTCAGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCGTGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACAAACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATAGCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTGTTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAGGCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAGGAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATTGGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTACTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAGGATTC]
consensusID : consensus_347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGGGCGCCCGATGTCTGCCTGTACCCACTTGCGGGCTTGGCTTTCAGTGACTAATTGATTTCCCCCCATAGCAGGATAGTCAATCCTGCGTATGGCGGCACGGTCCATTTGGGGATTGAACCCATGACGGGCATGTTGTTTATGTCGTACGAGTTGACGACTGTACTACGAGACCGGCTATTATTTATAATAAAAAATATGTGTGGTTTTTTGGCAAGATTGTGGTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCAATAAAGTGTTAAAATATCAAACAAAAAAAAAA]
[+] EMBL CF541633 [AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGGGCGCCCGATGTCTGCCTGTACCCACTTGCGGGCTTGGCTTTCAGTGACTAATTGATTTCCCCCCATAGCAGGATAGTCAATCCTGCGTATGGCGGCACGGTCCATTTGGGGATTGAACCCATGACGGGCATGTTGTTTATGTCGTACGAGTTGACGACTGTACTACGAGACCGGCTATTATTTATAATAAAAAATATGTGTGGTTTTTTGGCAAGATTGTGGTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCAATAAAGTGTTAAAATATCAAACAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_347#0 GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTC 60
consensus_347#1 ------------------------------------------------------------
consensus_347#0 AGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCG 120
consensus_347#1 -----AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGG----GCGCC 51
*** * * *** * * * **** * ** * *** * *
consensus_347#0 TGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACA 180
consensus_347#1 CGATGTCTGCCTGTACCCACT---TGCGGGCTTGGCTTTCAGTGACTAATTG-----ATT 103
* ** * * * * **** * ** * *** * * ***** *
consensus_347#0 AACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATA 240
consensus_347#1 TCCCCCCATAGCAGGATA----GTCAATCCTGCGTATGGCGGCACGGTCC--ATTTGGGG 157
*** ** * * *** ** * ** *** ** ** ** *
consensus_347#0 GCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTG 300
consensus_347#1 ATTGAACCCATGACGGGCAT-GTT-GTTTATGTCGTA----CGAGTTGACGACTGTACTA 211
* ** ** ** * *** * **** * * *** ** * *
consensus_347#0 TTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAG 360
consensus_347#1 CGAGACCG--GCTATTATTTATAATAAAA--AATATGTGTGGTTTTTTGGCAAGATTGTG 267
* ** * ** * * ** *** * ** * ** * * * * *
consensus_347#0 GCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAG 420
consensus_347#1 GTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCA--ATAAAGTGTTAAAATATCAAACAA 325
* * *** * * * * * **** * ** * ** * *** * * ** *
consensus_347#0 GAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATT 480
consensus_347#1 AAAAAAAA---------------------------------------------------- 333
**** **
consensus_347#0 GGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTA 540
consensus_347#1 ------------------------------------------------------------
consensus_347#0 CTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAG 600
consensus_347#1 ------------------------------------------------------------
consensus_347#0 GATTC 605
consensus_347#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||