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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1175 fasta sequence
[CCGCCCACGCGTCCGGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACGAAGATTCGCTTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTTTAGGATACAGTCTAGATAGTTTAGATTAGTTTTGTAAAATTAAAAAAAAATCCCTTTCGTTATTTTCCATTAACTGTACGTTTTTTTTTTCTCTGTCACTCTCTATATTTTGGTTAAGACTTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAAGCAATCTTATGCCACGAACAAAGACATTTTTAGTTTAAGTCGTTTTTCAACTGTAGCTGACCGTAAAATGATCTGAAGAAGAAGAAAAAAAAAACACTCCCAATCGAATGTAGCTATAAACGAAAGCGCCAGGAAACGCGTCCATGAAGGAGGATTACGCGCCCCAAAGCCTAATCGATGTGTCCTAAACAGCCCGTAAACAAAAAATGAAAACAATCGTACACGTATAAATATTGTAAAGCTCGCAGTGAGCTAGCAAAAAAAAAGAACATGAAAATATGTATGTGTGTTGTGTGTATAATGGAAATATGTTGTAGCGTTTACTAAGGATCCACACTTTTATAGGTAGTTGGTTAGATAAACAAGTACATGCGCTCGTGCAGCCGGAGTTGGAGGCGGAAAATGGAGAGTGTGCTGGTGGTGGTAGTGGTGTGCACATGAAGCAACATCGATGCAGTAGATATGAATAACGAAATTATACGATCAGTCACACATACACAAACACACACACTGGCTTCCGGTTGCACGTCAGCAGAAGCAGTCGTCACGAACAAACGAACAAATATATCAAACAAAATATATGCAAGCGTGTGTACAATGTGAATGTATGGGCAGAGGGGGCGAAGCAAAGGGGGAGATTCGCCGCTTGGAAAACACCGAATTTCTTCAAAACACTTCAGATAGGACTGAAAAATCAATCAAACTTAAAACTGAGCATACATTGTAGATGGCGCGGAACGGAAGAGAAAGGAAAAGGAAGATGCGAAAGAAAGTATTTTGTGCGCTGTGCCGTGAACAATCCGTTTGTAAGGAGCTGTCCAACCAATGTGGCATACAAAATATTCGACGGGTTTGCATGCAAATGTGAAAGTAATA]
[+] EMBL BM615890 [CCGCCCACGCGTCCGGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACGAAGATTCGCTTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTTTAGGATACAGTCTAGATAGTTTAGATTAGTTTTGTAAAATTAAAAAAAAATCCCTTTCGTTATTTTCCATTAACTGTACGTTTTTTTTTTCTCTGTCACTCTCTATATTTTGGTTAAGACTTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAAGCAATCTTATGCCACGAACAAAGACATTTTTAGTTTAAGTCGTTTTTCAACTGTAGCTGACCGTAAAATGATCTGAAGAAGAAGAAAAAAAAAACACTCCCAATCGAATGTAGCTATAAACGAAAGCGCCAGGAAACGCGTCCATGAAGGAGGATTACGCGCCCCAAAGCCTAATCGATGTGTCCTAAACAGCCCGTAAACAAAAAATGAAAACAATCGTACACGTATAAATATTGTAAAGCTCGCAGTGAGCTAGCAAAAAAAAAGAACATGAAAATATGTATGTGTGTTGTGTGTATAATGGAAATATGTTGTAGCGTTTAC ]
[+] EMBL BX608081 [ CAAAAAAAAAGAACATGAAAATATGTATGTGTGTTGTGTGTATAATGTAAATATGTTGTAGCGTTTACTAAGGATCCACACTTTTATAGGTAGTTGGTTAGATAAACAAGTACATGCGCTCGTGCAGCCGGAGTTGGAGGCGGAAAATGGAGAGTGTGCTGGTGGTGGTAGTGGTGTGCACATGAAGCAACATCGATGCAGTAGATATGAATAACGAAATTATACGATCAGTCACACATACACAAACACACACACTGGCTTCCGGTTGCACGTCAGCAGAAGCAGTCGTCACGAACAAACGAACAAATATATCAAACAAAATATATGCAAGCGTGTGTACAATGTGAATGTATGGGCAGAGGGGGCGAAGCAAAGGGGGAGATTCGCCGCTTGGAAAACACCGAATTTCTTCAAAACACTTCAGATAGGACTGAAAAATCAATCAAACTTAAAACTGAGCATACATTGTAGATGGCGCGGAACGGAAGAGAAAGGAAAAGGAAGATGCGAAAGAAAGTATTTTGTGCGCTGTGCCGTGAACAATCCGTTTGTAAGGAGCTGTCCAACCAATGTGGCATACAAAATATTCGACGGGTTTGCATGCAAATGTGAAAGTAATA]
consensusID : consensus_3474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGGATCTCTTTCATTAGGTGCTGCGATAGCTAGTTGTTTGTTGTGTTGTGTATCGTTAACGTGCCCGAAGATAAAGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACGAAGATTCGCGTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTTTAGGATACAGTCTAGATAGTTTAGATTAGTTTGGTAAAATTTAAAAAAATCCCTTTCGTTATTCTCCATTAACTGTATTTTTTTTTTTCTCTGTCACTCTCTACATTTTGTTTAAGACTTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAAGCAATCTTATGCCACGAACAAAGACATCTTTAGTTTAAGTCGTTTTTCAACCGTAGCTGACCGTAAAATGATCTGAAGAAGAAGAGAAAAAAACACTCCCAATCGAATGTAGCTATAAACGAAAGCGCCAGGAAACGCGTCCATGAAGGATGATTACGCGCCCCAAAGCCTAATCGATGTGTCCTAAACAGCCCGTAAACAAAAAAAATGAAAACAATCGTACACGTATAAATATTGTAAAGCTCGCAGTGAGCTAGCAAAAAAAAGAACA]
[+] EMBL BM649580 [CCGGATCTCTTTCATTAGGTGCTGCGATAGCTAGTTGTTTGTTGTGTTGTGTATCGTTAACGTGCCCGAAGATAAAGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACGAAGATTCGCGTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTTTAGGATACAGTCTAGATAGTTTAGATTAGTTTGGTAAAATTTAAAAAAATCCCTTTCGTTATTCTCCATTAACTGTATTTTTTTTTTTCTCTGTCACTCTCTACATTTTGTTTAAGACTTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAAGCAATCTTATGCCACGAACAAAGACATCTTTAGTTTAAGTCGTTTTTCAACCGTAGCTGACCGTAAAATGATCTGAAGAAGAAGAGAAAAAAACACTCCCAATCGAATGTAGCTATAAACGAAAGCGCCAGGAAACGCGTCCATGAAGGATGATTACGCGCCCCAAAGCCTAATCGATGTGTCCTAAACAGCCCGTAAACAAAAAAAATGAAAACAATCGTACACGTATAAATATTGTAAAGCTCGCAGTGAGCTAGCAAAAAAAAGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3474#0 ------------------------------------------------------------
consensus_3474#1 CCGGATCTCTTTCATTAGGTGCTGCGATAGCTAGTTGTTTGTTGTGTTGTGTATCGTTAA 60
consensus_3474#0 -CCGCCCACGCGTCCGGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACG 59
consensus_3474#1 CGTGCCCGAAGATAAAGCAAGTAGCAGCGATCGTTTAGCTATCAGACCGACGGTTTAACG 120
**** * ********************************************
consensus_3474#0 AAGATTCGCTTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTT 119
consensus_3474#1 AAGATTCGCGTATAGTGTACAGTATGGTGTACTATTTTTTCTCCATTTTCATTTCCCTTT 180
********* **************************************************
consensus_3474#0 TAGGATACAGTCTAGATAGTTTAGATTAGTTTTGTAAAATTAAAAAAAAATCCCTTTCGT 179
consensus_3474#1 TAGGATACAGTCTAGATAGTTTAGATTAGTTTGGTAAAATTTAAAAAAA-TCCCTTTCGT 239
******************************** ******** ******* **********
consensus_3474#0 TATTTTCCATTAACTGTACGTTTTTTTTTTCTCTGTCACTCTCTATATTTTGGTTAAGAC 239
consensus_3474#1 TATTCTCCATTAACTGTAT-TTTTTTTTTTCTCTGTCACTCTCTACATTTTGTTTAAGAC 298
**** ************* ************************* ****** *******
consensus_3474#0 TTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAA 299
consensus_3474#1 TTTTCAGCATTCAATTAGATACACTCGCTAGTTAAAAGAATATAGCTAAGGATCTCCAAA 358
************************************************************
consensus_3474#0 GCAATCTTATGCCACGAACAAAGACATTTTTAGTTTAAGTCGTTTTTCAACTGTAGCTGA 359
consensus_3474#1 GCAATCTTATGCCACGAACAAAGACATCTTTAGTTTAAGTCGTTTTTCAACCGTAGCTGA 418
*************************** *********************** ********
consensus_3474#0 CCGTAAAATGATCTGAAGAAGAAGAAAAAAAAAACACTCCCAATCGAATGTAGCTATAAA 419
consensus_3474#1 CCGTAAAATGATCTGAAGAAGAAGAGAAAAAAA-CACTCCCAATCGAATGTAGCTATAAA 477
************************* ******* **************************
consensus_3474#0 CGAAAGCGCCAGGAAACGCGTCCATGAAGGAGGATTACGCGCCCCAAAGCCTAATCGATG 479
consensus_3474#1 CGAAAGCGCCAGGAAACGCGTCCATGAAGGATGATTACGCGCCCCAAAGCCTAATCGATG 537
******************************* ****************************
consensus_3474#0 TGTCCTAAACAGCCCGTAAACAAAAAA--TGAAAACAATCGTACACGTATAAATATTGTA 537
consensus_3474#1 TGTCCTAAACAGCCCGTAAACAAAAAAAATGAAAACAATCGTACACGTATAAATATTGTA 597
*************************** *******************************
consensus_3474#0 AAGCTCGCAGTGAGCTAGCAAAAAAAAAGAACATGAAAATATGTATGTGTGTTGTGTGTA 597
consensus_3474#1 AAGCTCGCAGTGAGCTAGCAAAAAAAA-GAACA--------------------------- 629
*************************** *****
consensus_3474#0 TAATGGAAATATGTTGTAGCGTTTACTAAGGATCCACACTTTTATAGGTAGTTGGTTAGA 657
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 TAAACAAGTACATGCGCTCGTGCAGCCGGAGTTGGAGGCGGAAAATGGAGAGTGTGCTGG 717
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 TGGTGGTAGTGGTGTGCACATGAAGCAACATCGATGCAGTAGATATGAATAACGAAATTA 777
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 TACGATCAGTCACACATACACAAACACACACACTGGCTTCCGGTTGCACGTCAGCAGAAG 837
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 CAGTCGTCACGAACAAACGAACAAATATATCAAACAAAATATATGCAAGCGTGTGTACAA 897
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 TGTGAATGTATGGGCAGAGGGGGCGAAGCAAAGGGGGAGATTCGCCGCTTGGAAAACACC 957
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 GAATTTCTTCAAAACACTTCAGATAGGACTGAAAAATCAATCAAACTTAAAACTGAGCAT 1017
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 ACATTGTAGATGGCGCGGAACGGAAGAGAAAGGAAAAGGAAGATGCGAAAGAAAGTATTT 1077
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 TGTGCGCTGTGCCGTGAACAATCCGTTTGTAAGGAGCTGTCCAACCAATGTGGCATACAA 1137
consensus_3474#1 ------------------------------------------------------------
consensus_3474#0 AATATTCGACGGGTTTGCATGCAAATGTGAAAGTAATA 1175
consensus_3474#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||