These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1123 fasta sequence [CCGCAGACCAACTTCGCCAGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAAGTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGTGCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGCCGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCTACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCATTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCGGCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAGTACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCACAACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTGTCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAAACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGGTCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCCGTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCAAGTGGTTCGTGGAAAAAAAATGGCC] [+] EMBL BM640392 [CCGCAGACCAACTTCGCCAGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAAGTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGTGCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGCCGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCTACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCATTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCGGCGGCG ] [+] EMBL BM588614 [ ccgGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAAT CGGGTGAAGCGGAACAGCGAGCCGGCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAGTACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCACAACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTGTCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAAACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGGTCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCCGTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCAAGTGGTTCGTGGAAAAAAAATGGCC] consensusID : consensus_3482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGGAAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA] [+] EMBL AGA281887 [AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGGAAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3482#0 ------------------------------------------CCGCAGACCAACTTCGCC 18 consensus_3482#1 AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGG 60 * ** * * * consensus_3482#0 AGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGT 78 consensus_3482#1 AAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGT 120 * * ******************************************************** consensus_3482#0 CAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTG 138 consensus_3482#1 CAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTG 180 ***************************************************** ****** consensus_3482#0 GAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGAT 198 consensus_3482#1 GAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGAT 240 ************************************************************ consensus_3482#0 GTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAA 258 consensus_3482#1 GTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA---------------------------- 272 ******************************** consensus_3482#0 GTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGT 318 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 GCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGC 378 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 CGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCT 438 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 ACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCA 498 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 TTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGG 558 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 ATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCG 618 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 AGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCG 678 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 GCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAG 738 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 TACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCAC 798 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 AACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTG 858 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 TCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAA 918 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 ACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGG 978 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 TCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCC 1038 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 GTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCA 1098 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 AGTGGTTCGTGGAAAAAAAATGGCC 1123 consensus_3482#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||