These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence [GAATCCCCCGAGGTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACGCGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCACCACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGAGCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGGGCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTACCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACATGCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCGCGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCGACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGGTTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGACTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCCATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAGATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATAC] [+] EMBL AL693448 [GAATCCCCCGAGGTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACGCGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCACCACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGAGCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGGGCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTACCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACATGCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCGCGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCGACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGG ] [+] EMBL AGA281999 [ GGA TGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATAAAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGGTTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGACTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCCATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAGATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATAC] consensusID : consensus_3484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGCCAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAAGTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCGGCCGGAGGATATGCTCAGCGCAACGGAGCCGACGCGCATGCGGCTGGCGCAACAGTACGACCGGTACGGTGACTCTTACACGCGCCCCACCACACCGACCTCGTTCGGCGCCCTGCTGCGCCGCATGGGAGGCGACACCGGCGAGCCGGGCCGCCTGACCGACCGGGAGGTGGTACGGGGCGAGCGGATGCTGCTGGGCGTGCGGCACGCCACCCGCATGCGTTTGTTCCGCGGTCTCACCGGACGGCTGTACCGGTCCGCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACATGCTGC] [+] EMBL BM646095 [CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGCCAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAAGTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCGGCCGGAGGATATGCTCAGCGCAACGGAGCCGACGCGCATGCGGCTGGCGCAACAGTACGACCGGTACGGTGACTCTTACACGCGCCCCACCACACCGACCTCGTTCGGCGCCCTGCTGCGCCGCATGGGAGGCGACACCGGCGAGCCGGGCCGCCTGACCGACCGGGAGGTGGTACGGGGCGAGCGGATGCTGCTGGGCGTGCGGCACGCCACCCGCATGCGTTTGTTCCGCGGTCTCACCGGACGGCTGTACCGGTCCGCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACATGCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3484#0 ------------------------------------------------------------ consensus_3484#1 CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGC 60 consensus_3484#0 ----------------------------------------------------------GA 2 consensus_3484#1 CAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAA 120 * consensus_3484#0 ATCCCCCGAG-------GTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCAC 55 consensus_3484#1 GTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCAC 180 * * *** * * *************************************** consensus_3484#0 CGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACG 115 consensus_3484#1 CGAGGGTAGGCTGGAAGCGTTCC-GGCCGGAGGATATGCTCAGCGCAACGGAGCC-GACG 238 *********************** ******************************* **** consensus_3484#0 CGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCAC 175 consensus_3484#1 CGCATGCG-GCTGGCGCAACAGTACGACC-GGTACGGTGACTCTTACACG--CGCCCCAC 294 ******** ******************** ******************* ******* consensus_3484#0 CACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGA 235 consensus_3484#1 CACACC-GACCTCGTTCGG--CGCCCTGCTGCGCC-GCATGGGAGGC-GACACC-GGCGA 348 ****** ********** * ************* *********** ****** ***** consensus_3484#0 GCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGG 295 consensus_3484#1 GCCGGG--CCGCCTGACC-GACCGGGA--GGTGGTAC-GGGGCGAGC-GGATGCTGCTGG 401 *** ** * ******** **** ** ******** ********* ************ consensus_3484#0 GCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTA 355 consensus_3484#1 GC-GTGC-GGCAC-GCCACCCGCATGCGTTTGTTCC--GCGGTCTCACCGGACGGCTGTA 456 ** **** ***** ********************** ******************** consensus_3484#0 CCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACAT 415 consensus_3484#1 CC-GGTCC-GCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACAT 514 ** ***** ***************************** * * **************** consensus_3484#0 GCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCG 475 consensus_3484#1 GCTGC------------------------------------------------------- 519 ***** consensus_3484#0 CGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCG 535 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 ACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGC 595 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 TGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCT 655 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 GACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGG 715 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 TTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGA 775 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 CTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCC 835 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 ATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAG 895 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 ATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATA 955 consensus_3484#1 ------------------------------------------------------------ consensus_3484#0 C 956 consensus_3484#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||