These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence [TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTGGTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGGGGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGAGCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAATAGCAACATAAACGACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGTTTGATGTGTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAACGGGGAAGGAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCGTTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATTTCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTGGTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAAAAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA] [+] EMBL CNS09AXQ [TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTGGTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGGGGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGAGCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAATAGCAACATAAACGACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGTTTGATGTGTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAACGGGGAAGGAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCGTTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATTTCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTGGTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAAAAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATAT ] [-] EMBL CNS09AXR [ TTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA] consensusID : consensus_3491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [CAGCATTTACAGTACAGAGAAAAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGATGGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAGGAAAGAAGTCG] [-] EMBL AGA282209 [CAGCATTTACAGTACAGAGAAAAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGATGGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAGGAAAGAAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3491#0 TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTG 60 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 GTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGG 120 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 GGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGA 180 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 GCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAAT 240 consensus_3491#1 -------------------------------------CAGCATTTACAG--TACAGAGAA 21 * * * **** * * consensus_3491#0 AGCAACATAAACG-ACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGT---TTGATGT 296 consensus_3491#1 AAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGAT 81 * ** * * * * * * * ** **** ** ** * * consensus_3491#0 GTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACT 356 consensus_3491#1 GGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACT 141 * ******************************************************** consensus_3491#0 GACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGA 416 consensus_3491#1 GACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGA 201 ************************************************************ consensus_3491#0 AAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGG 476 consensus_3491#1 AAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCT-------AGCCGGCGCCGGG 254 **************************************** ************* consensus_3491#0 CGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCA-ACGGGGAAG 535 consensus_3491#1 CGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAG 314 ************************************************** ********* consensus_3491#0 GAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCG 595 consensus_3491#1 GAAAGAAGTCG------------------------------------------------- 325 *********** consensus_3491#0 TTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATT 655 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 TCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTG 715 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 GTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAA 775 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 AAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACAC 835 consensus_3491#1 ------------------------------------------------------------ consensus_3491#0 TGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA 889 consensus_3491#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||