These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAGCACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGTTCTTGGTCGATCGAATACGGTCTTTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGAGAGTGCGAAAAAGCGAAAGGTGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGTACATAATAACAGTGGACACAAACGATGGGTC] [+] EMBL BM624114 [CCGATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAGCACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGTTCTTGGTCGATCGAATACGGTCTTTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGAGAGTGCGAAAAAGCGAAAGGTGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGTACATAATAACAGTGGACACAAACGATGGGTC] consensusID : consensus_3507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 635 fasta sequence [CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC] [+] EMBL BM581527 [CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC] [+] EMBL BM612196 [ ccgGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCATGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTATAAGTTGCAAATTTGCATTTAATCGTTTTGGGATACAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTACTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3507#0 CCG----ATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAG 56 consensus_3507#1 CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGT---------GTATTGCACGATCAG 51 *** ***************************** ** * ********* consensus_3507#0 CACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTG 116 consensus_3507#1 CACAGGGCCCCC-TTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTG 110 ************ *********************************************** consensus_3507#0 TTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTT 176 consensus_3507#1 TTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTT 170 ****************** *********** ***************************** consensus_3507#0 TTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGT 236 consensus_3507#1 TTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGT 230 ************************************************************ consensus_3507#0 TTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAG 296 consensus_3507#1 TTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAG 290 ************************************* ** ******************* consensus_3507#0 CGCCGGTAGTGATCGTACTGTGTGTG----------TTCTTGGTCGATCGAATACGGTCT 346 consensus_3507#1 CGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCT 350 ************************** ******** ************ ** consensus_3507#0 TTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCAC 406 consensus_3507#1 TTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCAC 410 ************************** ********************************* consensus_3507#0 AAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCT 466 consensus_3507#1 AAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCT 470 ** ********************************************************* consensus_3507#0 AATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGC 526 consensus_3507#1 AATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGC 530 ********************************* ************************** consensus_3507#0 TGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGA 586 consensus_3507#1 TGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGA 590 ************************************** ********************* consensus_3507#0 GAGTGCGAAAAAGCGAAAGG-TGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGT 645 consensus_3507#1 GAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC--------------- 635 *** **************** ****** ***************** consensus_3507#0 ACATAATAACAGTGGACACAAACGATGGGTC 676 consensus_3507#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||