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Anopheles gambiae
cluster # 3517 cluster # 3517       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3517#0 length = 1088 sequences # 2  
consensus_3517#1 length = 681 sequences # 1  

consensusID : consensus_3517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1088
fasta sequence
                              [CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT]

[+] EMBL BM581554             [CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM635839             [                                                                                                                                                                                                                                                                                                                                                                                          ccGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTATAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT]


>consensus_3517#0 CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCC TAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGC ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG TGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCAT CCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCG TGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCG CCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAA GGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGA ACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAAT GATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAA TAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACC CCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAA ACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTA GATGCACT



consensusID : consensus_3517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT]

[+] EMBL BM637022             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT]


>consensus_3517#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCG GCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAAT AGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGT CTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTT AGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAG TCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAA ATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGT AAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACC CTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGT GCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGC CCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAA AGGGGAATGAAATCATACTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3517#0      CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCC 60
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      TAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGC 120
consensus_3517#1      ------CCGCCCACGCGTCCGCCCACGC-GTCCGGTTGACACGCATTAGCAAAACTGTGC 53
                              **  * * ***    ** *   *   **************************

consensus_3517#0      ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 180
consensus_3517#1      ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 113
                      ************************************************************

consensus_3517#0      GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 240
consensus_3517#1      GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 173
                      ************************************************************

consensus_3517#0      CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 300
consensus_3517#1      CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 233
                      ************************************************************

consensus_3517#0      AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 360
consensus_3517#1      AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 293
                      ************************************************************

consensus_3517#0      CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 420
consensus_3517#1      CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 353
                      ************************************************************

consensus_3517#0      ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 480
consensus_3517#1      ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 413
                      ************************************************************

consensus_3517#0      TGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCAT 540
consensus_3517#1      TGTGTG--TAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCAT 471
                      ******  *********** ************************* **************

consensus_3517#0      CCAATCAC----------AACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGC 590
consensus_3517#1      CCAATCACCCTAGCATACAACGAGATTCATT----CAAACAAGACTCAATCACGTGGCGC 527
                      ********          *************    *************************

consensus_3517#0      TAGAGTAG--CGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCA 648
consensus_3517#1      TAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTA 587
                      ********  ***** ****** ********* ********** ************** *

consensus_3517#0      ACTTAACAGTCGCCCAGGATACGCTTCACCATG-CCAAGAATATTTCATTTCCCACTGCA 707
consensus_3517#1      ACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGA 647
                      ***************** * ***** ******* *** * * **************** *

consensus_3517#0      -GGGAGTAGGAAAAGGA-AATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCG 765
consensus_3517#1      AGGGAGTAGGAAAAGGGGAATGAAATCATACTAT-------------------------- 681
                       ***************  ****************                          

consensus_3517#0      AGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAAC 825
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      CTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTA 885
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      TGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGC 945
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      GATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAAC 1005
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      GTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATAC 1065
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      GCTGGTGAACTTCTAGATGCACT 1088
consensus_3517#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)