These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGATACGTCAGCTTTACCACGTGGGGCACGGCA] [+] EMBL BM640146 [CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGT ] [+] EMBL BM646596 [ ccgATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGCGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGATACGTCAGCTTTACCACGTGGGGCACGGCA] consensusID : consensus_3521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAGCATCGCTTCAAGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTC] [+] EMBL BM615023 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAGCATCGCTTCAAGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3521#0 ----------CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATT 50 consensus_3521#1 CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTG 60 * ** * * *** * * * *** * *** ** ** * consensus_3521#0 --GTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGT------------GCAT 96 consensus_3521#1 CAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTAC 120 * * * * ***** * * *** ** * * consensus_3521#0 TGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCC 156 consensus_3521#1 AATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAG--CATCG-CTTCA 177 * * *** * *** ** * * * * *** *** * * * ** consensus_3521#0 TGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATG 216 consensus_3521#1 AGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAG 237 * * ** ** * ** * * * * * * * * * ** * consensus_3521#0 AATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCA 276 consensus_3521#1 AATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCA 297 ************************************************************ consensus_3521#0 AGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGG 336 consensus_3521#1 AGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGG 357 ********************** *********************** ************* consensus_3521#0 TGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCAC 396 consensus_3521#1 TGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCAC 417 ************************************************************ consensus_3521#0 CGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCG 456 consensus_3521#1 CGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCG 477 ********************** ************************************* consensus_3521#0 GACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATC 516 consensus_3521#1 GACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATC 537 ************************************************************ consensus_3521#0 CACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATC 576 consensus_3521#1 CACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATC 597 ************************************************************ consensus_3521#0 TTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGAT 636 consensus_3521#1 TTACCGGTGAACCGTTC------------------------------------------- 614 ***************** consensus_3521#0 ACGTCAGCTTTACCACGTGGGGCACGGCA 665 consensus_3521#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||