These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CACTAAAAAAAGGAACCCAACTTCAATATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCAGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGTCTTCTTCATCCATTTTTTTTAAACAAACGACAGCTGTGCTATTGATTTCGTTGACGATTTCAAACAGCAAACCCCCTCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAGGGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTGCTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATAGAGTAA] [+] EMBL BX624662 [CACTAAAAAAAGGAACCCAACTTCAATATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCAGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGTCTTCTTCATCCATTTTTTTTAAACAAACGACAGCTGTGCTATTGATTTCGTTGACGATTTCAAACAGCAAACCCCCTCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAGGGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTGCTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATAGAGTAA] consensusID : consensus_3530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CAAACAGTTCGCGTCCGCCAGCACATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGTAAGCAGCAACATTCCCGCAAAGCAAATTCCAACCCCCGCGAAGGGGTTCGAGCCAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGCGTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACACACACACATACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCCTTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGAGTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCC] [+] EMBL AGA283148 [CAAACAGTTCGCGTCCGCCAGCACATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGTAAGCAGCAACATTCCCGCAAAGCAAATTCCAACCCCCGCGAAGGGGTTCGAGCCAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGCGTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACACACACACATACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCCTTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGAGTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCC] consensusID : consensus_3530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTTTGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATACTCTGTCTTCTTCATTCA] [+] EMBL BM617398 [CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTTTGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATACTCTGTCTTCTTCATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3530#0 ------------------------------------------------------------ consensus_3530#2 CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTT 60 consensus_3530#1 ------------------------------------------------------------ consensus_3530#0 ----------------------------------CACTAAAAAAAGGAACCCAACTTCAA 26 consensus_3530#2 TGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAA 120 consensus_3530#1 ------------------------------------CAAACAGTTCGCGTCCGCCAGCA- 23 * ** * * * * ** consensus_3530#0 TATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGAC 86 consensus_3530#2 TATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGAC 180 consensus_3530#1 CATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGT 83 ** ** * * * * * * *** * ** consensus_3530#0 ACCGTGTATT-TCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCC-- 143 consensus_3530#2 ACCGTGTATT-TCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGA 239 consensus_3530#1 AAGCAGCAACATTCCCGCAAAGCAAATTCC-----AACCCCCGCGAAGGGGTTCGAGC-- 136 * * * * * * * * ** ** * * * ****** * consensus_3530#0 ----------ACTTTTAGGAGAAG-ACACCACCATCCCAGAACTATAGCAGTATGA---- 188 consensus_3530#2 CCATTATGCCACTTTTAGGAGAAG-ACACCACCATCCCAGAACTATAGCCGTATGA---- 294 consensus_3530#1 ---------CAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGC 187 * * * *** *** * * **** ** * *** consensus_3530#0 GCAATGCGGAGCTATACGCCGAA-GCCTATCCGGATCGGGGCATGTACGAACCACCGAGA 247 consensus_3530#2 GCAATGCGGAGCTATACGCCGAA-GCCTATCCGGATCGGGGCATGTACGAACCACCGAGA 353 consensus_3530#1 GTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACAC-ACACACA 246 * * * * ** **** ** * * ** **** ** ** * * consensus_3530#0 CGCCCGTATGCTAACAATAAGG-TTTGACAAGATCGACGCCAA-ACACGAGATCACCACC 305 consensus_3530#2 CGCCCGTATGCTAACAATAAGG-TTTGACAAGATCGACGCCAA-ACACGAGATCACCACC 411 consensus_3530#1 TACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCC 306 * ** *** *** **** * * * * * * * ** consensus_3530#0 GCAACCAATTGCAACCAACAG--CCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCA 363 consensus_3530#2 GCAACCAATTGCAACCAACAG--CCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCA 469 consensus_3530#1 TTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGA 366 ** * *** ** *** * ** * **** * ** * * consensus_3530#0 GTTTCGCTACTGCTGTTGGAAAT-AATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGT 422 consensus_3530#2 GTTTCGCTACTGCTGTTGGAAAT-AATTGTCCCACTTTGTTCCCAGTTACCATACTCTGT 528 consensus_3530#1 GTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTT 426 ***** * **** * ** * * * * * * * * * ** * consensus_3530#0 CTTCTTCA-TCCATTTTTTTTAAACAAACGACAGC-TGTGCTATTGATTTCGTTGACGAT 480 consensus_3530#2 CTTCTTCA-TTCA----------------------------------------------- 540 consensus_3530#1 ATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTT 486 * ** * consensus_3530#0 TTCAAACAGCAAACCCCC----TCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAG 536 consensus_3530#2 ------------------------------------------------------------ consensus_3530#1 TTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACC 546 consensus_3530#0 GGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTG 596 consensus_3530#2 ------------------------------------------------------------ consensus_3530#1 ACCATCCCAG--AACTATAGCCGTATGAGC-AATGCGGAGCTATACGCCGAAGCCTATCC 603 consensus_3530#0 CTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATA 656 consensus_3530#2 ------------------------------------------------------------ consensus_3530#1 ------------------------------------------------------------ consensus_3530#0 GAGTAA 662 consensus_3530#2 ------ consensus_3530#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||