These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGCGCTGCCAGCTGCTCCTCCGACTGTACGATTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGCGAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAAATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC] [+] EMBL BM614685 [CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGCGCTGCCAGCTGCTCCTCCGACTGTACGATTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGCGAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAAATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC] consensusID : consensus_3532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [GTACACGGAGGAGCAGCTGGCAGCGCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGCGAGACGGACGGCTGGAAGAGGGAGCTGACGGGCGAGCTG] [+] EMBL BX613295 [GTACACGGAGGAGCAGCTGGCAGCGCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGACAGTGGGTCGAGTACAATCTCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAACGACATGCAGTTCATCCGGCGCGGCGAGACGGACGGCTGGAAGAGGGAGCTGACGGGCGAGCTG] consensusID : consensus_3532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [CGCACATGCCTGCTATTGNGTNTAAACGGAGGAGTTGCCNNAGGTTTAATGTGATTTATTTAAAATGTTTGGCCAATTATAATTTAGAATTGATTTTTTACATATGTTTATCCCTTCAAAGTTATTGAAACAGGGTCGCATATTTGCTATCCTTGGGGA] [+] EMBL BX466838 [CGCACATGCCTGCTATTGNGTNTAAACGGAGGAGTTGCCNNAGGTTTAATGTGATTTATTTAAAATGTTTGGCCAATTATAATTTAGAATTGATTTTTTACATATGTTTATCCCTTCAAAGTTATTGAAACAGGGTCGCATATTTGCTATCCTTGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3532#0 CGTCCGGCCAGATGCGTCAAAATACGGCCAAAGTCGAGATGGTGGGCGAGC-GCTGCCAG 59 consensus_3532#1 -------------------------------------GTACACGGAGGAGCAGCTGGCAG 23 consensus_3532#2 ------------------------------------------------------------ consensus_3532#0 CTGCTCCTCCGACTGTACGA-TTTGGCCAGATGCGTCAAAATACGGCCGTCAATCGCAGA 118 consensus_3532#1 C-GCTCGCCCACCATCTCGACTTTGGCCAGAAGCGTCAAAATACGGCCGTCAATCGCAGA 82 consensus_3532#2 -------CGCACATGCCTGCTATTGNGTNTAAACGGAGGA-----GTTGCCNNAGGTTTA 48 * * *** * ** * * * * * * consensus_3532#0 CAGTGGGTCGAGTACAATCTCATCCAGCAAACGAACCGGCCGGACCGGGTGAACGACAAC 178 consensus_3532#1 CAGTGGGTCGAGTACAATCT---CCAGCAAACGAACCGGCCGGACCGGGTGAACGACAAC 139 consensus_3532#2 ATGTGATTTATTTAAAATGT---TTGGCCAATTA-TAATTTAGAATTGATTTTTTACAT- 103 *** * ** *** * ** ** * ** * * *** consensus_3532#0 GACATGCAGTTCATCCGGCGCGGTGAGACGGAAAACGGCTGGAAGCGGGAGCTGTCGGGC 238 consensus_3532#1 GACATGCAGTTCATCCGGCGCGGCGAGACGGA---CGGCTGGAAGAGGGAGCTGACGGGC 196 consensus_3532#2 -ATGTTTATCCCTTCAAAGTTATTGAAACAGG-----GTCGCATATTTGCTATCCTTGGG 157 * * * * ** ** ** * * * * * * ** consensus_3532#0 GAGCTGATCGAGGCGCTCGATCGCTGGACGTTGGACAGGGTCCCCAAGGACTGATAGCAA 298 consensus_3532#1 GAGCTG------------------------------------------------------ 202 consensus_3532#2 GA---------------------------------------------------------- 159 ** consensus_3532#0 ATATGCGACCCTGTTTCAATGACTTTGAAGGGATAAAC 336 consensus_3532#1 -------------------------------------- consensus_3532#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||