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Anopheles gambiae
cluster # 3535 cluster # 3535       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3535#0 length = 966 sequences # 2  
consensus_3535#1 length = 616 sequences # 1  

consensusID : consensus_3535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 966
fasta sequence
                              [CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA]

[+] EMBL BM591490             [CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAA                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AGA283242            [                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGAAGGAAGCCTTCCGTGC  GGTTGGAGGGTGTTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA]


>consensus_3535#0 CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT GCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCA CCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGC TCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATG TTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAAT ATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGT GGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTT GGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCAC CCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGAC TAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAA ATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGA GTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGA CTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCA GCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTT CTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTG TGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAA ACGTAA



consensusID : consensus_3535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT]

[+] EMBL BM622699             [AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT]


>consensus_3535#1 AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATT TGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAG TGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAG CTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAG AAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGC GTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCT GCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGT GGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCG TAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCG CGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAAC CCCTCCCGATCACGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3535#0      CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 60
consensus_3535#1      ------AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 54
                            ******************************************************

consensus_3535#0      GCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCA 120
consensus_3535#1      GCAATTTGCTTCGGTAAAA-GGGATTAACTGCAGGTAAATCC-TATACAGTG----GTGA 108
                      ******************* ************** *    *  ** ** *       * *

consensus_3535#0      CCACCATCCATACATACACACC-TTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTG 179
consensus_3535#1      TTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGG 168
                         * **       *    *   ** ***  * *     ** *   *  *    **** *

consensus_3535#0      CTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCAT 239
consensus_3535#1      GTCAGGAACAAGC--------TGTGAAGCCTTCT---CAT---TGTGGTGCTGTGT---T 211
                       ** ** *  **         ****   *  * *   * *   ****  *******   *

consensus_3535#0      GTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAA 299
consensus_3535#1      GTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTC-----------GTTAC 260
                      **  * **  *          ** *   *    * *** *   *           ** * 

consensus_3535#0      TATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAG 359
consensus_3535#1      CTCTTAA-------CCTTACACG---GCTTGTGCCGTTGT-------GTGTGCGCGCGTG 303
                         * *         ** * * *   **** **  ****            * ** *  *

consensus_3535#0      TGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTT 419
consensus_3535#1      TG-TGTGTGTG-TTGTATTTTTATGTTTTATTGC--CCCTGTTTGTGGAAC-TAATTATT 358
                      ** ** ***** **** * * * ** **   ***   *  ***** **    * *   **

consensus_3535#0      TGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCA 479
consensus_3535#1      CTGCTTTAAAAACGATGTTTCGCTCGC-TTTTATCAACAATTTATCAACGATGTCAAACG 417
                        ***  *  **         *   ** **   *      *        * * *  * * 

consensus_3535#0      CCCAATGTTGCAGTTTATGA--TTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGC 537
consensus_3535#1      TGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGT 477
                              **  * * * *   **   **     *   ****   * *    *  **** 

consensus_3535#0      GACTAGTGTGCC--GTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGG 595
consensus_3535#1      GCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCC---TGGC--TCCTTCTCCGCGG 532
                      *  **  *** *  ******  *  **   * ** *     ***   **  * *  * **

consensus_3535#0      TGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTC 655
consensus_3535#1      ----GGTCCGCG---CGTCGCCGCGTAA-GGGCCTTGTTATCAAGCAACATTTTGTGTTG 584
                            ** * *   ***** *  * ** ***   *** **     *      ** * * 

consensus_3535#0      GGAGAGTAAAACAAACA--TACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGC 713
consensus_3535#1      GACCGTTGTTTTCAACCCCTCCCGATCACGAT---------------------------- 616
                      *     *      ***   * **** * **                              

consensus_3535#0      GCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTT 773
consensus_3535#1      ------------------------------------------------------------
                                                                                  

consensus_3535#0      TGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGA 833
consensus_3535#1      ------------------------------------------------------------
                                                                                  

consensus_3535#0      TGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGT 893
consensus_3535#1      ------------------------------------------------------------
                                                                                  

consensus_3535#0      GTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCAT 953
consensus_3535#1      ------------------------------------------------------------
                                                                                  

consensus_3535#0      TATTTAAACGTAA 966
consensus_3535#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)