These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 966 fasta sequence [CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA] [+] EMBL BM591490 [CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAA ] [-] EMBL AGA283242 [ GGAAGGAAGCCTTCCGTGC GGTTGGAGGGTGTTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA] consensusID : consensus_3535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT] [+] EMBL BM622699 [AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3535#0 CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 60 consensus_3535#1 ------AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 54 ****************************************************** consensus_3535#0 GCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCA 120 consensus_3535#1 GCAATTTGCTTCGGTAAAA-GGGATTAACTGCAGGTAAATCC-TATACAGTG----GTGA 108 ******************* ************** * * ** ** * * * consensus_3535#0 CCACCATCCATACATACACACC-TTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTG 179 consensus_3535#1 TTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGG 168 * ** * * ** *** * * ** * * * **** * consensus_3535#0 CTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCAT 239 consensus_3535#1 GTCAGGAACAAGC--------TGTGAAGCCTTCT---CAT---TGTGGTGCTGTGT---T 211 ** ** * ** **** * * * * * **** ******* * consensus_3535#0 GTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAA 299 consensus_3535#1 GTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTC-----------GTTAC 260 ** * ** * ** * * * *** * * ** * consensus_3535#0 TATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAG 359 consensus_3535#1 CTCTTAA-------CCTTACACG---GCTTGTGCCGTTGT-------GTGTGCGCGCGTG 303 * * ** * * * **** ** **** * ** * * consensus_3535#0 TGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTT 419 consensus_3535#1 TG-TGTGTGTG-TTGTATTTTTATGTTTTATTGC--CCCTGTTTGTGGAAC-TAATTATT 358 ** ** ***** **** * * * ** ** *** * ***** ** * * ** consensus_3535#0 TGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCA 479 consensus_3535#1 CTGCTTTAAAAACGATGTTTCGCTCGC-TTTTATCAACAATTTATCAACGATGTCAAACG 417 *** * ** * ** ** * * * * * * * consensus_3535#0 CCCAATGTTGCAGTTTATGA--TTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGC 537 consensus_3535#1 TGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGT 477 ** * * * * ** ** * **** * * * **** consensus_3535#0 GACTAGTGTGCC--GTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGG 595 consensus_3535#1 GCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCC---TGGC--TCCTTCTCCGCGG 532 * ** *** * ****** * ** * ** * *** ** * * * ** consensus_3535#0 TGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTC 655 consensus_3535#1 ----GGTCCGCG---CGTCGCCGCGTAA-GGGCCTTGTTATCAAGCAACATTTTGTGTTG 584 ** * * ***** * * ** *** *** ** * ** * * consensus_3535#0 GGAGAGTAAAACAAACA--TACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGC 713 consensus_3535#1 GACCGTTGTTTTCAACCCCTCCCGATCACGAT---------------------------- 616 * * *** * **** * ** consensus_3535#0 GCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTT 773 consensus_3535#1 ------------------------------------------------------------ consensus_3535#0 TGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGA 833 consensus_3535#1 ------------------------------------------------------------ consensus_3535#0 TGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGT 893 consensus_3535#1 ------------------------------------------------------------ consensus_3535#0 GTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCAT 953 consensus_3535#1 ------------------------------------------------------------ consensus_3535#0 TATTTAAACGTAA 966 consensus_3535#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||