These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence [CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGGGCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGCTACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTG] [+] EMBL BM614288 [CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGGGCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGC ] [+] EMBL BM618697 [ ccGGGCGGATCGGGCTCCGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGCTACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTG] consensusID : consensus_3542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCTTCATCATCAGCAACAGCAACACCTAGGCTCGTCGCAACACAATGGTCCCTGTGGGGGCAGTGCCGGCAGTGGAAGTGCTTCCGG] [+] EMBL BM634293 [CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCTTCATCATCAGCAACAGCAACACCTAGGCTCGTCGCAACACAATGGTCCCTGTGGGGGCAGTGCCGGCAGTGGAAGTGCTTCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3542#0 CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCA 60 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGG 120 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 GCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGA 180 consensus_3542#1 ---CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGA 57 ******* ***** ** ************************************* consensus_3542#0 TGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCG 240 consensus_3542#1 TGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCG 117 ***** ********************** ******************************* consensus_3542#0 TACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGAT 300 consensus_3542#1 TACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGAT 177 ****************** ***************************************** consensus_3542#0 CGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGA 360 consensus_3542#1 CGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGA 237 ******* **** ********************************************** consensus_3542#0 TGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGA 420 consensus_3542#1 TGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGA 297 ********************************** ************************* consensus_3542#0 CGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATC 480 consensus_3542#1 CGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATC 357 ************************************************************ consensus_3542#0 AGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAAC 540 consensus_3542#1 AGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAAC 417 ************************************************************ consensus_3542#0 ACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGC 600 consensus_3542#1 ACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGC 477 ************************************************************ consensus_3542#0 AACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGC 660 consensus_3542#1 AACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATC-TTCAT 536 ****************************************************** *** consensus_3542#0 TACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACG 720 consensus_3542#1 CATCAGCAA--CAGCAACACCTAG---GCTCGTCGCAACACAATGGTCCCTGTGGGGGCA 591 * * * * ** **** * **** ** ** * * * * consensus_3542#0 GTACCAGCAGCAGTG---------- 735 consensus_3542#1 GTGCCGGCAGTGGAAGTGCTTCCGG 616 ** ** **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||