These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTTCCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT] [+] EMBL BX626667 [TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTTCCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT] consensusID : consensus_3556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence [CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCGTTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGC--GCAGCGGCAACAGCTCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA] [+] EMBL BM613843 [CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCGTTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGC GCAGCGGCAACAGCTCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA] [-] EMBL BX628387 [ CATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAA AAAAAAAAAAAAAAACAGGCATGTTGCGGC C GCTCCaacatc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3556#0 ------------------------------------------------------------ consensus_3556#1 CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCG 60 consensus_3556#0 -------------TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTAC 47 consensus_3556#1 TTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTAC 120 *********************************************** consensus_3556#0 TTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTA 107 consensus_3556#1 TTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTA 180 ************************************************************ consensus_3556#0 GCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCAC 167 consensus_3556#1 GCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCAC 240 ************************************************************ consensus_3556#0 ACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCA 227 consensus_3556#1 ACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCA 300 ************************************************************ consensus_3556#0 TCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTAT 287 consensus_3556#1 TCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTAT 360 ************************************************************ consensus_3556#0 CAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGAT 347 consensus_3556#1 CAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGAT 420 ************************************************************ consensus_3556#0 GGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTT 407 consensus_3556#1 G----------------------------------------------------------- 421 * consensus_3556#0 CCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCG 467 consensus_3556#1 ----------------TGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCG 465 ******************************************** consensus_3556#0 CGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGAC 527 consensus_3556#1 CGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGAC 525 ************************************************************ consensus_3556#0 GATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGC 587 consensus_3556#1 GATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGC 585 ************************************************************ consensus_3556#0 TCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT 640 consensus_3556#1 TCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA------ 632 ************* *************************** ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||