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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence
[TCACACATGATCGTAAAAGTAGAAAAATCGTGTGTATGTGTATGTGTGTGTTGGGGTTCCTCATCATCATCAATTGGCAGATTTTAATTTTTAATGCTATTTTACTTAACATCCACACTTTGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTAGCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAGTTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCCATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATA-AGCTGATTTA-ACTTAACGCATACACACTTTAAGAATTGGCTTAA--GACCG-TATATG-TGTA---AAAGC--AAACAAACCCAAAAAAAAACACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATACATGTCATCATATTCANAAAACAAAACACGCCAAGTGCATCAACCCGCAGAAGCTGTAAAACACACTCTACCTTTGCCAAGAGCAGAGCAAAACAGTGTGGGCCCATAATCCATGTCTTTCAACACAGGTATTTAGACACACAGGCGAGGGGTGGTTGGAGGTTAAAATTAATAAACAGCAACAGGGGATAAGGAAACGACTACACCGGAACCTGGTAGAAACCCAACAAAAAGGTTCCATTTTAACACACATTGGANTTTCACACAATCGGCCCACGCCAAAACAACACCATAATTGGCACTNTGGACGTNTTGGCCAGCCTTTTCNNTACACAGGCTGACATCACCTGGTCATTCATNCACACAACCAAAAAAACCCGGACCAACAAACAACACGCACCACCAGAGCCACACACCTTGAATAC]
[-] EMBL AGA283662 [TCACACATGATCGTAAAAGTAGAAAAATCGTGTGTATGTGTATGTGTGTGTTGGGGTTCCTCATCATCATCAATTGGCAGATTTTAATTTTTAATGCTATTTTACTTAACATCCACACTTTGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTAGCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAGTTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCCATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATA AGCTGATTTA ACTTAACGCATACACACTTTAAGAATTGGCTTAA GACCG TATATG TGTA AAAGC AAACAAACCCAAAAAAAA ]
[+] EMBL AL694932 [ gcagtATACACAC TTGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTAGCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAGTTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCCATGTGTGGGCAGAAGGCGAAACNAAAAGGTGCTATACAGCTGATTTACACTTAACGCATACACACTTTAAGAATTGGCTTAANGGACCGTTATATGTTGTAAACAAAGCANAAACAAAACCAAAAGAAAACACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATACATGTCATCATATTCANAAAACAAAACACGCCAAGTGCATCAACCCGCAGAAGCTGTAAAACACACTCTACCTTTGCCAAGAGCAGAGCAAAACAGTGTGGGCCCATAATCCATGTCTTTCAACACAGGTATTTAGACACACAGGCGAGGGGTGGTTGGAGGTTAAAATTAATAAACAGCAACAGGGGATAAGGAAACGACTACACCGGAACCTGGTAGAAACCCAACAAAAAGGTTCCATTTTAACACACATTGGANTTTCACACAATCGGCCCACGCCAAAACAACACCATAATTGGCACTNTGGACGTNTTGGCCAGCCTTTTCNNTACACAGGCTGACATCACCTGGTCATTCATNCACACAACCAAAAAAACCCGGACCAACAAACAACACGCACCACCAGAGCCACACACCTTGAATAC]
consensusID : consensus_3565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[CCCGAGGTTTCACACTTGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTAGCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAGTTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCCATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATAAGCTGATTTAACTTAACGCATACACACTTTAAGAATTGGCTTAAGACCGTATATGTGTAAAAGCAAACAAAACCAAAAGAAAACACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATAATGTATCATATTCAAAAAAAACACGCCAAGTGCATCAACCCCGCAGAAGCTGTAAACACACTCTACCTTTGACAAGAGAGAGAAAACAGTGTGGGCCAATAATCCATGTCTTTCAACACAGGTATTTAGACACACAGGCGAGGGGGTGGTTGGAGGTTTANNTTTTAATAAAAGCAAAGGGGATCAAGGAAACGACTACACCGAACTGTAGAACCNNCAANAAGTTCCACTTCACAATTGATTAAAATCGCCACGCAACAAACATATTGATTGATTTGCCGCTTTCATCANAAGTTACAACGTNATTATCAAAACACANACCGCACACAACAAAGCNCACAGCAGCAAAC]
[+] EMBL AL694727 [CCCGAGGTTTCACACTTGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTAGCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAGTTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCCATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATAAGCTGATTTAACTTAACGCATACACACTTTAAGAATTGGCTTAAGACCGTATATGTGTAAAAGCAAACAAAACCAAAAGAAAACACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATAATGTATCATATTCAAAAAAAACACGCCAAGTGCATCAACCCCGCAGAAGCTGTAAACACACTCTACCTTTGACAAGAGAGAGAAAACAGTGTGGGCCAATAATCCATGTCTTTCAACACAGGTATTTAGACACACAGGCGAGGGGGTGGTTGGAGGTTTANNTTTTAATAAAAGCAAAGGGGATCAAGGAAACGACTACACCGAACTGTAGAACCNNCAANAAGTTCCACTTCACAATTGATTAAAATCGCCACGCAACAAACATATTGATTGATTTGCCGCTTTCATCANAAGTTACAACGTNATTATCAAAACACANACCGCACACAACAAAGCNCACAGCAGCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3565#0 TCACACATGATCGTAAAAGTAGAAAAATCGTGTGTATGTGTATGTGTGTGTTGGGGTTCC 60
consensus_3565#1 ------------------------------------------------------------
consensus_3565#0 TCATCATCATCAATTGGCAGATTTTAATTTTTAATGCTATTTTACTTAACATCCACACTT 120
consensus_3565#1 -------------------------------------------CCCGAGGTTTCACACTT 17
* * * *******
consensus_3565#0 TGCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTA 180
consensus_3565#1 -GCACATTTCACATCGCTTCACATATTGAATTGGCTACGAAGAACAATTGGGGTATGTTA 76
***********************************************************
consensus_3565#0 GCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAG 240
consensus_3565#1 GCATGGGGAGAGAGAGAGAGAGAGATGTTCCTCTATTATTGGCTACAATTGGCGCATAAG 136
************************************************************
consensus_3565#0 TTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCC 300
consensus_3565#1 TTCTGTGTACACCAATGCTGCAAAAACCCCTTCGAGATGAGCACACTCTATCTATACCCC 196
************************************************************
consensus_3565#0 ATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATAAGCTGATTTAACTTAACGCATACA 360
consensus_3565#1 ATGTGTGGGCAGAAGGCGAAACAAAAAGGTGCTATAAGCTGATTTAACTTAACGCATACA 256
************************************************************
consensus_3565#0 CACTTTAAGAATTGGCTTAAGACCGTATATGTGTAAAAGCAAACAAACCCAAAAAAAAAC 420
consensus_3565#1 CACTTTAAGAATTGGCTTAAGACCGTATATGTGTAAAAGCAAACAAAACCAAAAGAAAAC 316
*********************************************** ****** *****
consensus_3565#0 ACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATACAT 480
consensus_3565#1 ACAGCACTTTATTGCACTACAATGAAAAAGAAACTACAATTTACTTACTAACATATA-AT 375
********************************************************* **
consensus_3565#0 GTCATCATATTCANAAAACAAAACACGCCAAGTGCATCAACCC-GCAGAAGCTGTAAAAC 539
consensus_3565#1 GT-ATCATATTCAAAAA---AAACACGCCAAGTGCATCAACCCCGCAGAAGCTGTAAA-C 430
** ********** *** *********************** ************** *
consensus_3565#0 ACACTCTACCTTTGCCAAGAGCAGAGCAAAACAGTGTGGGCCCATAATCCATGTCTTTCA 599
consensus_3565#1 ACACTCTACCTTTGACAAGAG-AGAG-AAAACAGTGTGGGCCAATAATCCATGTCTTTCA 488
************** ****** **** *************** *****************
consensus_3565#0 ACACAGGTATTTAGACACACAGGCGAGGGG-TGGTTGGAGGTTAAAATT--AATAAACAG 656
consensus_3565#1 ACACAGGTATTTAGACACACAGGCGAGGGGGTGGTTGGAGGTTTANNTTTTAATAAA-AG 547
****************************** ************ * ** ****** **
consensus_3565#0 CAACAGGGGATAAGGAAACGACTACACCGGAACCTGGTAGAAACCCAACAAAAAGGTTCC 716
consensus_3565#1 CAAAGGGGATCAAGGAAACGACTACACCGAA---CTGTAGAA--CCNNCAANAAG-TTCC 601
*** *** ****************** * ****** ** *** *** ****
consensus_3565#0 ATTTTAACACACATTGGANTTTCACACAATCGGCCCACGCCAAAACAACACCATAATTGG 776
consensus_3565#1 ACTT-----CACAATTGATT-----AAAATCG--CCACGCAACAA--ACATATTGATTGA 647
* ** **** * ** * * ***** ****** * ** *** * ****
consensus_3565#0 CACTNTGGACGTNTTGGCCAGCCTTTTCNNTACACAGGCTGACATCACCTGGTCATTCAT 836
consensus_3565#1 ----TTTGCCGCTTTCATCANAAGTTACAAC---------GTNATTATCAAAACACANA- 693
* * ** ** ** ** * * ** * * ** *
consensus_3565#0 NCACACAACCAAAAAAACCCGGACCAACAAACAACACGCACCACCAGAGCCACACACCTT 896
consensus_3565#1 CCGCACA--CAACAAAGCNCACAGCAGCAAAC---------------------------- 723
* **** *** *** * * * ** *****
consensus_3565#0 GAATAC 902
consensus_3565#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||