These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence [CCGCCCACGCGTCCGCCCGGACAAGGCCCAGATAGACCACAGGAAGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGCGAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATTTAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAAATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGAATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGATACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCACTCGCTTGGTATCTGTCACCGTGACATCAAACCACAGAACCTGCTGCTTAATCCTGAGACGGCAGTGCTAAAGCTGTGCGACTTTGGAAGCGCCAAGCAGCTGCTGGACGGTGAGCCAAACGTGTCGTACATCTGCTCCAGATATTATCGAGCACCGGAGCTGATATTCGGCGCTATCAACTACACCACTAAAATTGACGTATGGAGTGCAGGATGCGTGCTTGCAGAACTGTTGCTCGGACAACCAATCTTCCCGGGAGATTCTGGCGTCGATCAGCTGGTGGAAATCATCAAAGTCCTCGGCACACCGACACGGGAGCAGATCAAAGAGATGAATCCCAATTATACGGAATTCAAATTCCCTCAGATCAAGAGTCATCCATGGCAAAAGGTGTT] [+] EMBL BM650279 [CCGCCCACGCGTCCGCCCGGACAAGGCCCAGATAGACCACAGGAAGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGCGAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATTTAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAAATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGAATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGATACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCACTCGCTTGGTATCTGTCACCGTGACATCAAACCACAGAACCTGCTGCTTAATCCTGAGACGGCAGTGCTAAAGCTGTGCGACTTTGGAAGCGCCAAGCAGCTGCTGGACGGTGAGCCAAACGTGTCGTACATCTGCTCCAGATATTATCGAGCACCGGAGCTGATATTCGGCGCTATCAACTACACCACTAAAATTGACGTATGGAGTGCAGGATGCGTGCTTGCAGAACTGTTGCTCGGACAACCAATCTTCCCGGGAGATTCTGGCGTCGATCAGCTGGTGGAAATCATCAAAG ] [+] EMBL BM648968 [ CCG GAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAAATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGAATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGATACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCACTCGCTTGGTATCTGTCACCGTGACATCAAACCACAGAACCTGCTGCTTAATCCTGAGACGGCAGTGCTAAAGCTGTGCGACTTTGGAAGCGCCAAGCAGCTGCTGGACGGTGAGCCAAACGTGTCGTACATCTGCTCCAGATATTATCGAGCACCGGAGCTGATATTCGGCGCTATCAACTACACCACTAAAATTGACGTATGGAGTGCAGGATGCGTGCTTGCAGAACTGTTGCTCGGACAACCAATCTTCCCGGGAGATTCTGGCGTCGATCAGCTGGTGGAAATCATCAAAGTCCTCGGCACACCGACACGGGAGCAGATCAAAGAGATGAATCCCAATTATACGGAATTCAAATTCCCTCAGATCAAGAGTCATCCATGGCAAAAGGTGTT] consensusID : consensus_3566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCCCACGCGTCCGCAGACGCGTTCGGTTGGAACTGTATCGATTAATGTTTTTCCATGCAACTAGGTATTTGTGATGCCTAATAGAATTTTCAAATTAATTTTTGGTGAATAATGGATTAGTTTTAGCTTTTCTAAATAGTGAACAAAGCTAAATTGTGTTAACTCCAAAACATACTCGTTAGCAAATTAAAATGGTCCTTATTGTTGAAACTATCGAGTTGACCTTCATAGGTAAGGACGGTTCCAAAGTGACGACGGTTGTAGCTACACCCGGACAAGGCCCAGATAGACCACAGGAAGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGCGAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATTTAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAAATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGAATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGATACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCACTCGCTTGGTATC] [+] EMBL BM613264 [CCGCCCACGCGTCCGCAGACGCGTTCGGTTGGAACTGTATCGATTAATGTTTTTCCATGCAACTAGGTATTTGTGATGCCTAATAGAATTTTCAAATTAATTTTTGGTGAATAATGGATTAGTTTTAGCTTTTCTAAATAGTGAACAAAGCTAAATTGTGTTAACTCCAAAACATACTCGTTAGCAAATTAAAATGGTCCTTATTGTTGAAACTATCGAGTTGACCTTCATAGGTAAGGACGGTTCCAAAGTGACGACGGTTGTAGCTACACCCGGACAAGGCCCAGATAGACCACAGGAAGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGCGAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATTTAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAAATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGAATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGATACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCACTCGCTTGGTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3566#0 ------------------------------------------------------------ consensus_3566#1 CCGCCCACGCGTCCGCAGACGCGTTCGGTTGGAACTGTATCGATTAATGTTTTTCCATGC 60 consensus_3566#0 ------------------------------------------------------------ consensus_3566#1 AACTAGGTATTTGTGATGCCTAATAGAATTTTCAAATTAATTTTTGGTGAATAATGGATT 120 consensus_3566#0 ------------------------------------------------------------ consensus_3566#1 AGTTTTAGCTTTTCTAAATAGTGAACAAAGCTAAATTGTGTTAACTCCAAAACATACTCG 180 consensus_3566#0 ------------------------------------------------------------ consensus_3566#1 TTAGCAAATTAAAATGGTCCTTATTGTTGAAACTATCGAGTTGACCTTCATAGGTAAGGA 240 consensus_3566#0 ----------------CCGCCCACGCGTCCGCCCGGACAAGGCCCAGATAGACCACAGGA 44 consensus_3566#1 CGGTTCCAAAGTGACGACGGTTGTAGCTACACCCGGACAAGGCCCAGATAGACCACAGGA 300 ** * * ***************************** consensus_3566#0 AGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGC 104 consensus_3566#1 AGTATCATACACAGATACTAAGATAATTGGCAATGGAAGCTTCGGTGTCGTCTTCCAGGC 360 ************************************************************ consensus_3566#0 GAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATT 164 consensus_3566#1 GAAACTCTGTGATACGGGCGAGCTAGTCGCTATCAAGAAGGTGTTACAGGACAAACGATT 420 ************************************************************ consensus_3566#0 TAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAA 224 consensus_3566#1 TAAGAACCGTGAACTACAGATCATGCGACGACTAGAACACTGTAACATCGTTAAGCTAAA 480 ************************************************************ consensus_3566#0 ATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGA 284 consensus_3566#1 ATATTTCTTCTACTCGAGTGGCGAAAAGAAAGACGAAGTTTATCTGAACTTAGTGCTCGA 540 ************************************************************ consensus_3566#0 ATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGAT 344 consensus_3566#1 ATATATCCCAGAAACGGTTTATAAAGTCGCCCGTCACTATGCTAAGAACAAGTTAACGAT 600 ************************************************************ consensus_3566#0 ACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCA 404 consensus_3566#1 ACCTATCAACTATATCCGAATTTACATGTATCAATTATTCAGAAGTCTTGCTTATATTCA 660 ************************************************************ consensus_3566#0 CTCGCTTGGTATCTGTCACCGTGACATCAAACCACAGAACCTGCTGCTTAATCCTGAGAC 464 consensus_3566#1 CTCGCTTGGTATC----------------------------------------------- 673 ************* consensus_3566#0 GGCAGTGCTAAAGCTGTGCGACTTTGGAAGCGCCAAGCAGCTGCTGGACGGTGAGCCAAA 524 consensus_3566#1 ------------------------------------------------------------ consensus_3566#0 CGTGTCGTACATCTGCTCCAGATATTATCGAGCACCGGAGCTGATATTCGGCGCTATCAA 584 consensus_3566#1 ------------------------------------------------------------ consensus_3566#0 CTACACCACTAAAATTGACGTATGGAGTGCAGGATGCGTGCTTGCAGAACTGTTGCTCGG 644 consensus_3566#1 ------------------------------------------------------------ consensus_3566#0 ACAACCAATCTTCCCGGGAGATTCTGGCGTCGATCAGCTGGTGGAAATCATCAAAGTCCT 704 consensus_3566#1 ------------------------------------------------------------ consensus_3566#0 CGGCACACCGACACGGGAGCAGATCAAAGAGATGAATCCCAATTATACGGAATTCAAATT 764 consensus_3566#1 ------------------------------------------------------------ consensus_3566#0 CCCTCAGATCAAGAGTCATCCATGGCAAAAGGTGTT 800 consensus_3566#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||