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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3567 cluster # 3567       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3567#0 length = 436 sequences # 1  
consensus_3567#1 length = 419 sequences # 2  

consensusID : consensus_3567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC]

[+] EMBL BX466652             [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC]


>consensus_3567#0 CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACA ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTC CCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATT CTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGG TGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGT TTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAA AGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATA TCCCTACCCTAAATGC



consensusID : consensus_3567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence
                              [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT]

[+] EMBL AGA283689            [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT]
[+] EMBL AGA284104            [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAATGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCT                                                                                                  ]


>consensus_3567#1 TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAA CGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTA TCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTG TTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTC TCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATT CGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGA CGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3567#0      CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACA 60
consensus_3567#1      -----------TTTTTTTTAATGGGTT---AAATCCTTTCTTTTTTTTATTTCAAGAACA 46
                                 ***********   **   ******** *********************

consensus_3567#0      ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTC 120
consensus_3567#1      ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTT 106
                      *********************************************************** 

consensus_3567#0      CCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATT 180
consensus_3567#1      CCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTG 166
                      ******* ** ** * *   ***  *   ** *  *    *  * *   *    *   * 

consensus_3567#0      CTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGG 240
consensus_3567#1      ATA--ACAACGTATTGTTTTTATCTCG-GTTAGGATA-AATGCTCATATCTCTCTGCCTC 222
                       *     *    ****     *    * * **** ** * *  * ****  *  *     

consensus_3567#0      TGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGT 300
consensus_3567#1      TCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCG--TTTCCTTCTTCT 280
                      *  ***      ** ** *    **  * ***    ** ** **     ** *   *  *

consensus_3567#0      TTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAA 360
consensus_3567#1      TGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATT 340
                      *       ** ***  *    * *   * ** *** * *  **      * **       

consensus_3567#0      AGAAAACAGT--CCAATCCATCTTCTCGTTTTCTTCCA-ACAATAACATTACACAGAAAC 417
consensus_3567#1      CCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAAT 400
                        **    *   ***    *  * *   ** * **  * **  *    **** *  *** 

consensus_3567#0      ATATCCCTACCCTAAATGC 436
consensus_3567#1      TTCAATTCGTTTCAGGTGT 419
                       *           *  ** 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)