Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3569 cluster # 3569       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3569#0 length = 688 sequences # 2  
consensus_3569#1 length = 535 sequences # 1  

consensusID : consensus_3569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence
                              [AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT]

[+] EMBL AGA283737            [AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTG                                                                                                                                                                                                                                                 ]
[-] EMBL AGA285027            [                                                                                                                                                                          GCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT]


>consensus_3569#0 AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGG CACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGA TGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGC GTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTT GTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGA AAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGG TAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGT TCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAG CTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGAC ACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACAC ACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAA CCCTTTTCCTCCCTATGGCGCGCGCGTT



consensusID : consensus_3569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA]

[+] EMBL BM644844             [CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA]


>consensus_3569#1 CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGT GAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCT CGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCG GCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGC ACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCA GCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCG ATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATC ACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGC AGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3569#0      AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGG 60
consensus_3569#1      ----------------------------------CCGCGGACGCGTGGGACACAATACAG 26
                                                        **** * * *  *   ***    * *

consensus_3569#0      CACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGA 120
consensus_3569#1      CAG--CAGCCACACACGCAGTGTGCAGTTCGACGGTGA-AACACGCGCGCCATAG--GGA 81
                      **      ****   ****  *  * * ** * * ***   *      *  *  *  ***

consensus_3569#0      TGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGC 180
consensus_3569#1      GGAAAAGGGCTTGTGCTGTGGGGATGTTTT-CTTTTCCCTCGGAACACCAG--TCGGAAA 138
                       ** *      * * ** ***   *  *** **   * **  *       *  **     

consensus_3569#0      GTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTC-TCGCT 239
consensus_3569#1      ATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCT 198
                       * **    **  * ** *           *** *** *    **  *  *    * ***

consensus_3569#0      TGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTG 299
consensus_3569#1      TCAGCTGTCTGCAGAT--GGAT--CCGTCCGGGGCGA------AGGCGATGCACC-ATCA 247
                      *  *  **  *  **   ***    * ** *  ***         * * **     **  

consensus_3569#0      AAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATT-GC 358
consensus_3569#1      CAAGAAGATTGCCGC--GTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGC 305
                       ***  ********   * *    **   ** *  ** ***** **    * * *   **

consensus_3569#0      GGTAAGTGACGTTGCTGCTG-TATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCG-GC 416
consensus_3569#1      AGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAA-GCTACGGCGATGA 364
                       * * * *  * *   ** * **  * *    *  * * ** ** * *** ** *   * 

consensus_3569#0      GTGTT-CCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACA--AACATTCAGTGTA 473
consensus_3569#1      GTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCA 424
                      ** *   *  *  *  * * *      * ***  *  *** * **  * **        *

consensus_3569#0      CATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCC 533
consensus_3569#1      CCATCACCATCTGGCGGACGG--GGGCGATGCGTACCGCAGCTCG---GGTAGGAGTTCG 479
                      *  * * * **      ** *    ****   * **  ***  *     ***  *   * 

consensus_3569#0      CGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACA-CACGCTTTTT 592
consensus_3569#1      CAGAACAGCTCGA-ACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA--- 535
                      * *     * *** ***   *    * * ** *      *   *  **  *  **     

consensus_3569#0      CGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCAC 652
consensus_3569#1      ------------------------------------------------------------
                                                                                  

consensus_3569#0      AGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT 688
consensus_3569#1      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)