These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT] [+] EMBL AGA283737 [AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGGCACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGATGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTG ] [-] EMBL AGA285027 [ GCTTCCTCGCGTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTCTCGCTTGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTGAAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATTGCGGTAAGTGACGTTGCTGCTGTATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCGGCGTGTTCCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACAAACATTCAGTGTACATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCCCGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACACACGCTTTTTCGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCACAGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT] consensusID : consensus_3569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA] [+] EMBL BM644844 [CCGCGGACGCGTGGGACACAATACAGCAGCAGCCACACACGCAGTGTGCAGTTCGACGGTGAAACACGCGCGCCATAGGGAGGAAAAGGGCTTGTGCTGTGGGGATGTTTTCTTTTCCCTCGGAACACCAGTCGGAAAATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCTTCAGCTGTCTGCAGATGGATCCGTCCGGGGCGAAGGCGATGCACCATCACAAGAAGATTGCCGCGTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGCAGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAAGCTACGGCGATGAGTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCACCATCACCATCTGGCGGACGGGGGCGATGCGTACCGCAGCTCGGGTAGGAGTTCGCAGAACAGCTCGAACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3569#0 AAGGCTGCTACTGCTACTGCCACTACCACCGCCACCGCCGCCACCCGCTCCACCGAGCGG 60 consensus_3569#1 ----------------------------------CCGCGGACGCGTGGGACACAATACAG 26 **** * * * * *** * * consensus_3569#0 CACGTTTACCACCTTCGCACGGAACCGCTCCATGCTGATGGCGTATATGTTACCGCCGGA 120 consensus_3569#1 CAG--CAGCCACACACGCAGTGTGCAGTTCGACGGTGA-AACACGCGCGCCATAG--GGA 81 ** **** **** * * * ** * * *** * * * * *** consensus_3569#0 TGACATTTTGCTTTCCTTTGGCTTTCCTTTGCTAAGCTCTACGTGTGGTCGCTTCCTCGC 180 consensus_3569#1 GGAAAAGGGCTTGTGCTGTGGGGATGTTTT-CTTTTCCCTCGGAACACCAG--TCGGAAA 138 ** * * * ** *** * *** ** * ** * * ** consensus_3569#0 GTGTATCACAGATTACGACTGCTGCCGGAGCGATCGATACGATCATTCCCTTTC-TCGCT 239 consensus_3569#1 ATATAGTGTAGTGTGCGGCGAACCGAAAGTCGACCGACATCGGCACACTGTACGATAGCT 198 * ** ** * ** * *** *** * ** * * * *** consensus_3569#0 TGTGGGGTTGGAGGACTCGGACAAGCTTCTGTTGCGTTTTGTTGCGTGTTGTGTGGATTG 299 consensus_3569#1 TCAGCTGTCTGCAGAT--GGAT--CCGTCCGGGGCGA------AGGCGATGCACC-ATCA 247 * * ** * ** *** * ** * *** * * ** ** consensus_3569#0 AAAGGGGATTGCCGTTGGACGCATTCACACCAGGTCCAGTCGATGCCTTTCGGTATT-GC 358 consensus_3569#1 CAAGAAGATTGCCGC--GTCCATCTCGAGCCCGAACCTGTCGAAGCAGGACAGCAGCAGC 305 *** ******** * * ** ** * ** ***** ** * * * ** consensus_3569#0 GGTAAGTGACGTTGCTGCTG-TATCTCATTTCCGTTGCCATCGAGACGCTTCGTCCG-GC 416 consensus_3569#1 AGCACGGGCAGCTCGGGCCGGTACGTGACCAGCCATCCGATGGAAA-GCTACGGCGATGA 364 * * * * * * ** * ** * * * * * ** ** * *** ** * * consensus_3569#0 GTGTT-CCATTCAGCAGCTAACTCTGTTTCTGTTCCACAGTAACA--AACATTCAGTGTA 473 consensus_3569#1 GTATCATCGCTTTGTGGATCAGCACAGTGCTGGCCAGCAGCAGCAGCATCAGCATCACCA 424 ** * * * * * * * * *** * *** * ** * ** * consensus_3569#0 CATTTAGCTTCCAAACAACAGCAAAGCGAAAAGAACAACAGTGCAAACAGTAACAACCCC 533 consensus_3569#1 CCATCACCATCTGGCGGACGG--GGGCGATGCGTACCGCAGCTCG---GGTAGGAGTTCG 479 * * * * ** ** * **** * ** *** * *** * * consensus_3569#0 CGGGGACACACGACACTTTCGTTTTCCGCAAAACCTTGCGCTGCCTACA-CACGCTTTTT 592 consensus_3569#1 CAGAACAGCTCGA-ACTCGAGCACGCTGAAACATTCCAAGGCACGGACGGCGGGCAA--- 535 * * * *** *** * * * ** * * * ** * ** consensus_3569#0 CGCCACACACTACACTATATTTTCCGACTGGTGTTCCGAGGGAAAAGAAAACATCCCCAC 652 consensus_3569#1 ------------------------------------------------------------ consensus_3569#0 AGCACAAACCCTTTTCCTCCCTATGGCGCGCGCGTT 688 consensus_3569#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||