cluster # 3577

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Anopheles gambiae
cluster # 3577 cluster # 3577 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3577#0 length = 1019 sequences # 1

consensus_3577#1 length = 680 sequences # 1
consensus_3577#2 length = 325 sequences # 1

consensusID : consensus_3577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1019
fasta sequence

                              [GGCAAGAATCGCNCACGAGGATAGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGCTGATCAAGGCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGATGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGTCGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGAGCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTTCGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAGCTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGCCAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTTCCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTTTGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAACCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGGCTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACATTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAACC]

[+] EMBL BX467396             [GGCAAGAATCGCNCACGAGGATAGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGCTGATCAAGGCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGATGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGTCGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGAGCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTTCGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAGCTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGCCAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTTCCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTTTGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAACCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGGCTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACATTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAACC]




>consensus_3577#0
GGCAAGAATCGCNCACGAGGATAGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAAC
GTGCTGATCAAGGCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAG
CTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGC
CGATGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGC
CGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGTCG
CCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGAGC
CGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAGTA
CGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTTCG
TCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAA
TTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAGCT
CGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGCCA
GTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTTCC
GGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTTTG
GGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAACC
CGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGGCT
AAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACATT
CCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAACC

consensusID : consensus_3577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCGTCCGTGCGGTTGTCCTTCGTCCAGTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGATAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCAGTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCCAAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACAAACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGATAACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCAAGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAACGGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAGCTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG]

[-] EMBL BM656442             [GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCGTCCGTGCGGTTGTCCTTCGTCCAGTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGATAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCAGTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCCAAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACAAACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGATAACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCAAGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAACGGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAGCTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG]




>consensus_3577#1
GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGC
CCCGCAGCTACAGTCCCCGTCCGTGCGGTTGTCCTTCGTCCAGTACAATCTGCTGGACGT
GTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCG
GGCAGTGGCGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGATAGTGGACAAAAGAA
GCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCAGTCGAGTAAACCTTA
GAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCCAAAGATGTTGAAGGG
GAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACAAACACAATATCGGTA
CGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGATAACGTTGAGTGATTG
GGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCAAGGTGCTAAATGGAG
CGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAACGGCAAGGGTGTGTGA
TATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAGCTTGTGTGATTAAAC
GAAAACCCACGCGTCCGCGG

consensusID : consensus_3577#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGAACGTGATCTGGAAGTACGAGAACGGACAGCCTGCCGGACAAGCCACCGAACGTGCTGATCAAGGCGTGGATGCCGCAGAGCGACATTCTGGCCCATCCGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGGGCCTGTACCACGGCAAGCCGATGGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGATTACGACACGCTCAGCGAG]

[-] EMBL AGA283854            [AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGAACGTGATCTGGAAGTACGAGAACGGACAGCCTGCCGGACAAGCCACCGAACGTGCTGATCAAGGCGTGGATGCCGCAGAGCGACATTCTGGCCCATCCGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGGGCCTGTACCACGGCAAGCCGATGGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGATTACGACACGCTCAGCGAG]




>consensus_3577#2
AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGAAC
GTGATCTGGAAGTACGAGAACGGACAGCCTGCCGGACAAGCCACCGAACGTGCTGATCAA
GGCGTGGATGCCGCAGAGCGACATTCTGGCCCATCCGAAGGTGAAGCTGTTCATCACGCA
CGGCGGTCTGCTCGGGACGACCGAGGGCCTGTACCACGGCAAGCCGATGGTTGGCATTCC
GATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAA
GCTCGATTACGACACGCTCAGCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3577#0      -------------------------------------------------------GGCAA 5
consensus_3577#2      --AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGA 58
consensus_3577#1      GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGC 60
                                                                             **   

consensus_3577#0      GAATCGCNCACGAGGAT-AGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGC 64
consensus_3577#2      ACGTGATCTGGAAGTACGAGAACGGACA-GCCTGCC--GGACAAGCC-ACCG-AACGTGC 113
consensus_3577#1      CCCGCAGCTAC-AGTCCCCGTCCGTGC--GGTTGTC----CTTCGTCCAGTACAATCTGC 113
                                  **     *  *   *  *  ** *        * * *    **  ***

consensus_3577#0      TGATCAAG-GCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTG 123
consensus_3577#2      TGATCAAG-GCGTGGATGCCGCAG--AGCGACATTCTGGCCCATCC-GAAGGTGAAGCTG 169
consensus_3577#1      TGGACGTGTACGCGGTTATGGGTG----CGATCGCTTTATCAGTGCTAATTGGGGCGGGG 169
                      **  *  *  ** ** *   *       ***     *   *  * *  *  * *  *  *

consensus_3577#0      TTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGA 183
consensus_3577#2      TTCATCACGCACGGCGGTCTGCTCGGGACGACCGAG-GGCCTGT-ACCACGGCAAGCCGA 227
consensus_3577#1      TTGATGCTGCG-GGCAGTGG---CGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGA 225
                      ** **   **  *** **     ** * **   * *     *   ** *   *   ****

consensus_3577#0      TG-TTGGCATTCCGATTTACGGCGAT----CAGGAGCTCAATCTGGCCCGGGCCGAACAG 238
consensus_3577#2      TGGTTGGCATTCCGATTTACGGCGAT----CAGGAGCTCAATCTGGCCCGGGCCGAACAG 283
consensus_3577#1      TAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCA 285
                      *  * * **     *    * * **     * *****  *** * **  *   * ***  

consensus_3577#0      GCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGT 298
consensus_3577#2      GCCGGGTACGGCGTGAAGCTCG-ATTAC---GACACGCTCAGCGAG-------------- 325
consensus_3577#1      GTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCC 345
                      * ** ***   * *  *      *  *      *    *  ** *               

consensus_3577#0      CGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGA 358
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      AAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACA 405
                                                                                  

consensus_3577#0      GCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAG 418
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      AACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGAT 465
                                                                                  

consensus_3577#0      TACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTT 478
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      AACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCA 525
                                                                                  

consensus_3577#0      CGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCT 538
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      AGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAAC 585
                                                                                  

consensus_3577#0      AATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAG 598
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      GGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAG 645
                                                                                  

consensus_3577#0      CTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGC 658
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      CTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG------------------------- 680
                                                                                  

consensus_3577#0      CAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTT 718
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      CCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTT 778
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      TGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAA 838
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      CCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGG 898
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      CTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACA 958
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      TTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAAC 1018
consensus_3577#2      ------------------------------------------------------------
consensus_3577#1      ------------------------------------------------------------
                                                                                  

consensus_3577#0      C 1019
consensus_3577#2      -
consensus_3577#1      -