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Anopheles gambiae
cluster # 3583 cluster # 3583       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3583#0 length = 740 sequences # 2  
consensus_3583#1 length = 361 sequences # 1  

consensusID : consensus_3583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 740
fasta sequence
                              [CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG-AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC]

[+] EMBL AGA283902            [CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCA                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM614907             [                                                                                                                                                                                                                                                                                             CATGACCAGCAGCAGCGCGTAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC]


>consensus_3583#0 CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCA CCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGC ACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTG GGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACAT GAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAG CGCGAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGAT GAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCG GAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCG GGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGA GTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGG ATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGA GCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTT CCAGTCGGCGGCCGATGCGC



consensusID : consensus_3583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA]

[+] EMBL AGA285196            [GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA]


>consensus_3583#1 GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGC TGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGG TCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTC GAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGT CCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGC TGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACG A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3583#0      CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCA 60
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      CCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGC 120
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      ACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTG 180
consensus_3583#1      -----------------------------GCCGGACGCCACGACGACATTTGCCAAGCCG 31
                                                   * ***  **   * * *** * **   ** *

consensus_3583#0      GGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACAT 240
consensus_3583#1      GA---CGCATAGCTGGAGG-------GTGGTGTTAGTGCTGCTG--------AGCTGGAG 73
                      *    * **  **  ** *       *****   **********        ***   * 

consensus_3583#0      GAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAG 300
consensus_3583#1      GGTTGAGCATGC--GCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTT 131
                      *    *  **    **  ***   ****  **** *** ** * *   * *  **     

consensus_3583#0      CGC-GAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGA 359
consensus_3583#1      CATTGAGCGG--ATCGAAGTCCTCC----AGCTCGA--AACTCGAGTTGGTGGTGTCGAG 183
                      *   *****     ** ** **  *    **  ***  * *****  *  * **      

consensus_3583#0      TGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGC-CAGCCGTCAAT 418
consensus_3583#1      CGTGATTAGATCAAGGGACTCA---TCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGT 240
                       *    *    ** * **  **    * *    * * *    * * *  * ** * *  *

consensus_3583#0      CGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCC 478
consensus_3583#1      CCCGGACGTGGAC-GCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTC-CCATTGAC- 297
                      *     *     * *  * * *** ***   *   * *    *  *     **** * * 

consensus_3583#0      CGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAG 538
consensus_3583#1      --GGCTGGCGATTTGAACAGT--GTCAGATGGT-GCTGCATCTC-CTGCCACAGGTTCAT 351
                        *** ** *    *  ***   * * *  **  ** *** * * ** ** *   * ** 

consensus_3583#0      GAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGC 598
consensus_3583#1      CCTCGGACGA-------------------------------------------------- 361
                           *  *                                                   

consensus_3583#0      GGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGAC 658
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      GAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGC 718
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      TTCCAGTCGGCGGCCGATGCGC 740
consensus_3583#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)