These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG-AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC] [+] EMBL AGA283902 [CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCA ] [+] EMBL BM614907 [ CATGACCAGCAGCAGCGCGTAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC] consensusID : consensus_3583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA] [+] EMBL AGA285196 [GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3583#0 CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCA 60 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 CCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGC 120 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 ACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTG 180 consensus_3583#1 -----------------------------GCCGGACGCCACGACGACATTTGCCAAGCCG 31 * *** ** * * *** * ** ** * consensus_3583#0 GGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACAT 240 consensus_3583#1 GA---CGCATAGCTGGAGG-------GTGGTGTTAGTGCTGCTG--------AGCTGGAG 73 * * ** ** ** * ***** ********** *** * consensus_3583#0 GAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAG 300 consensus_3583#1 GGTTGAGCATGC--GCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTT 131 * * ** ** *** **** **** *** ** * * * * ** consensus_3583#0 CGC-GAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGA 359 consensus_3583#1 CATTGAGCGG--ATCGAAGTCCTCC----AGCTCGA--AACTCGAGTTGGTGGTGTCGAG 183 * ***** ** ** ** * ** *** * ***** * * ** consensus_3583#0 TGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGC-CAGCCGTCAAT 418 consensus_3583#1 CGTGATTAGATCAAGGGACTCA---TCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGT 240 * * ** * ** ** * * * * * * * * * ** * * * consensus_3583#0 CGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCC 478 consensus_3583#1 CCCGGACGTGGAC-GCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTC-CCATTGAC- 297 * * * * * * *** *** * * * * * **** * * consensus_3583#0 CGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAG 538 consensus_3583#1 --GGCTGGCGATTTGAACAGT--GTCAGATGGT-GCTGCATCTC-CTGCCACAGGTTCAT 351 *** ** * * *** * * * ** ** *** * * ** ** * * ** consensus_3583#0 GAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGC 598 consensus_3583#1 CCTCGGACGA-------------------------------------------------- 361 * * consensus_3583#0 GGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGAC 658 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 GAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGC 718 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 TTCCAGTCGGCGGCCGATGCGC 740 consensus_3583#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||