These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG] [+] EMBL AGA283909 [TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAA ] [-] EMBL AGA285203 [ TGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGCCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG] consensusID : consensus_3584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT] [-] EMBL AY062190 [CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3584#0 TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGAT 60 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACT 120 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 AATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAA 180 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGT 240 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 CATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGG 300 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 CACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTT 360 consensus_3584#1 -------------------------------------------------------CAGTT 5 ***** consensus_3584#0 ACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTC 420 consensus_3584#1 GCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTC 65 ** * **** * **** ************** ************************** consensus_3584#0 ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 480 consensus_3584#1 ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 125 ************************************************************ consensus_3584#0 CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 540 consensus_3584#1 CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 185 ************************************************************ consensus_3584#0 GTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTT 600 consensus_3584#1 ATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTT 245 ** ** ** ***** ***** ******** ******** ** ** ** * ********* consensus_3584#0 TATCACCATGTCAAGGAACTGAAG------------------------------------ 624 consensus_3584#1 TATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTT 305 ********* ***** *** ** consensus_3584#0 ------------------------------------------------------------ consensus_3584#1 GGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTC 365 consensus_3584#0 ------------------------------------------------------------ consensus_3584#1 ACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAA 425 consensus_3584#0 --------- consensus_3584#1 CATGAACGT 434 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||