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Anopheles gambiae
cluster # 3584 cluster # 3584       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3584#0 length = 624 sequences # 2  
consensus_3584#1 length = 434 sequences # 1  

consensusID : consensus_3584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence
                              [TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG]

[+] EMBL AGA283909            [TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGATTGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACTAATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAATCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGTCATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGGCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAA                                                                                                                                                                                       ]
[-] EMBL AGA285203            [                                                                                                                                                                                                                                                           TGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGCCACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTTACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATGTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTTTATCACCATGTCAAGGAACTGAAG]


>consensus_3584#0 TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGAT TGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACT AATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAA TCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGT CATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGG CACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTT ACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTC ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT GTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTT TATCACCATGTCAAGGAACTGAAG



consensusID : consensus_3584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT]

[-] EMBL AY062190             [CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAACATGAACGT]


>consensus_3584#1 CAGTTGCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCT TCCTCACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTG TGCAGCGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATA AGCATATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTC TCCTTTATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGA GTTTTGGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTA GCGTCACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCT TCGAACATGAACGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3584#0      TTTTTTTTCAGTTCGTAATAAATTTCTACTTTATTTTTCTATTACAATCTCTTGCAAGAT 60
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TGGACTATACTAAGACACTGCTACCTAGAAGTAACTTCAATTTCTTTATTTAGTTTGACT 120
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      AATTAGTGTAAAATTTTTGGTCTGTATTTTTCCTCAAATGCCATGTTACGTATTTCTTAA 180
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TCTGGAAAGCCTCTATCTAGGAACAATTTTACTAAAAGCACCGTCTACCGGCTTCAGCGT 240
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      CATGTCCGTTTTGATGCGCAGCTTATTACGTTCATCGCAGGGCAGCAATTGATAGTTGGG 300
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      CACCAGCTTCACGAGCATCGTTTTGATCTCCAGCATCGCATACCGCTGTCCAATACAGTT 360
consensus_3584#1      -------------------------------------------------------CAGTT 5
                                                                             *****

consensus_3584#0      ACGAGCGCCGACACTGAACGGAATGTAGCTGTATGGCTGTCGCTTTTCCGAAGCTTCCTC 420
consensus_3584#1      GCGGGGGCCGGCGGTGAATGGAATGTAGCTGTAGGGCTGTCGCTTTTCCGAAGCTTCCTC 65
                       ** * **** *  **** ************** **************************

consensus_3584#0      ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 480
consensus_3584#1      ACTGAACCGCTCCGGATCGAAACGGGCCGGTTCGGGGTACAGCTCTGGATCGTTGTGCAG 125
                      ************************************************************

consensus_3584#0      CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 540
consensus_3584#1      CGCGTAGATAAGAATACCGAAATCCATTCCCTTCGGAATGGTAACACCATCGATAAGCAT 185
                      ************************************************************

consensus_3584#0      GTCCCCTGCTGATCGACGTCCAATGATCGGTACGGATGGATTGATCCGAAGCGTCTCCTT 600
consensus_3584#1      ATCACCGGCCGATCGGCGTCCTATGATCGGAACGGATGGGTTCATTCGCAACGTCTCCTT 245
                       ** ** ** ***** ***** ******** ******** ** ** ** * *********

consensus_3584#0      TATCACCATGTCAAGGAACTGAAG------------------------------------ 624
consensus_3584#1      TATCACCATCTCAAGATACTTCAGTTCTTGCAGTGTGCCGTAGGTAAGCTCTTGAGTTTT 305
                      ********* *****  ***  **                                    

consensus_3584#0      ------------------------------------------------------------
consensus_3584#1      GGCATCCGGGCCCACGATAGCGAGAATCTCATCGTACACACGCTGCTGGACGGTAGCGTC 365
                                                                                  

consensus_3584#0      ------------------------------------------------------------
consensus_3584#1      ACGAGAGAGATAGTACGCGGCAAAGCTAATACAGGAGGTGGTCGTGTCGTGCCCTTCGAA 425
                                                                                  

consensus_3584#0      ---------
consensus_3584#1      CATGAACGT 434
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)