These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACCGGTAATGTACGATCAGATAACACACTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCACAATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGCGAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATCAATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACAGTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCCGATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAAACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGGGTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT] [-] EMBL BM612643 [AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACCGG ] [+] EMBL BX623737 [ ATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACTGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCACAATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGCGAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATCAATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACAGTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCCGATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAAACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGGGTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT] consensusID : consensus_3589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTACCACCCCCCGCTTCCCCTGGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAAAA] [+] EMBL CNS08UW5 [ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTACCACCCCCCGCTTCCCCTGGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3589#0 AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTG-GGTTA 59 consensus_3589#1 -----------------ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTA 43 *********** ************************* ***** consensus_3589#0 ACGATGTACTCTACCGGCTCTACGCACTACGAAACCGGTAATGTACGATCAGATAACACA 119 consensus_3589#1 ACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACA 103 *********************************** ********************** consensus_3589#0 CTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCAC 179 consensus_3589#1 CTACCACCCCCCGCTTCCCCT----GGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAA 159 ** ** ****** * ***** **** *** **************** * *** * consensus_3589#0 AATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGC 239 consensus_3589#1 AA---------------------------------------------------------- 161 ** consensus_3589#0 GAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATC 299 consensus_3589#1 ------------------------------------------------------------ consensus_3589#0 AATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACA 359 consensus_3589#1 ------------------------------------------------------------ consensus_3589#0 GTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCC 419 consensus_3589#1 ------------------------------------------------------------ consensus_3589#0 GATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAA 479 consensus_3589#1 ------------------------------------------------------------ consensus_3589#0 ACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGG 539 consensus_3589#1 ------------------------------------------------------------ consensus_3589#0 GTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT 599 consensus_3589#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||