Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3601 cluster # 3601       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3601#0 length = 903 sequences # 2  
consensus_3601#1 length = 660 sequences # 1  

consensusID : consensus_3601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence
                              [CCGCCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATGTGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAAAATTTCATCCCCCCACCCCACACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGA--GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGGAGTGTGTTCGGCGGTGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGCCAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGTTAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTCCCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG]

[+] EMBL BM614828             [CCGCCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATGTGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAAAATTTCATCCCCCCACCCCACACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGA  GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGG                                                                                                                                                                                                                                                   ]
[+] EMBL BM626457             [                                                                                                                                                                                                                                                                                         ccgCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTGAGTGTGTGTGTGTTCATGTGCTTGTCTCGTGTTTT TTCTCCCCACTTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAGCAGCA  A CAACGCTTCCGCACACCTACTTTACACCGATAGCAACAACGCGAAGACTCCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCT CTTGCTGCTTGGAGTGTGTTCGGCGGTGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGCCAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGTTAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTCCCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG]


>consensus_3601#0 CCGCCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTT GGGTGCACTGGGTCTATGTGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCT GTGCCGTGGTTAGGTAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTG CTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTG TTTCTTCCTCCTCCTTTTTGCTTGTAAAATTTCATCCCCCCACCCCACACCATCTTTAAA ATTTTCCCGCAAGGGAAAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGG AAGTGTTGCAGGAGTGAGTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCAC TTTCCACCATCTCGTGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATT CCGGTTGAAAAGGCAGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGC ACACCTACTTTACACCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGA AATCATAAAAATGGATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGG AGTGTGTTCGGCGGTGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCA GACGTCCAAAACGCCAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGA GAAGGGATTCGTGTTAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGT CGAAAAATCCATTCCCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTG TCG



consensusID : consensus_3601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTTAGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATATTTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCGGCGAATCCGGTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAGTGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAAGGGAAATGTTGCAGGAGTGAATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAG]

[+] EMBL BM581743             [CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTTAGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATATTTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCGGCGAATCCGGTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAGTGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAAATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAAGGGAAATGTTGCAGGAGTGAATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAG]


>consensus_3601#1 CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTC ACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTT AGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATAT TTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCGGC GAATCCGGTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAGTGC AAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAAATC CCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGGTGA TTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTTTGC TTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGAAAA GGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAAGGGAAATGTTGCAGGAGTGAATGT GTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCGTGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3601#0      ------------------------------------------------------------
consensus_3601#1      CCGGACGGTTCGAAACTACCGCCATCGTTTGTCGCGCGTTCGTGTTCGTCGTCTGTTGTC 60
                                                                                  

consensus_3601#0      ------------------------------------------------------------
consensus_3601#1      ACCTTTCGCTGTTTTGGGTGCACTGGGTGCGTCTATGTGTGTGAGTGTGTGAGTGTTTTT 120
                                                                                  

consensus_3601#0      ------------------------------------------------------------
consensus_3601#1      AGCAAACGAATCCTTCTTCCAAGCGTGAAAGCGAGCGTTTCTTGTCAAAGTGCGACATAT 180
                                                                                  

consensus_3601#0      ------------------------------------------CCGCCGCCATCGTTTGTC 18
consensus_3601#1      TTCCCAAAAGCAATTGCAAATAAAATGTGAAACCAAGTTGGTTGGTCGCGATCGATCG-- 238
                                                                  * *** **** * *  

consensus_3601#0      GCGCGTTCGTGTTCGTCGTCTGTTGTCACCTTTCGCTGTTTTGGGTGCACTGGGTCTATG 78
consensus_3601#1      GCGAATCCG-GTTCCGGAAGTGTTGTAAAGTAACTGTGGCAAGTGGCAGATAAAGCAAAG 297
                      ***  * ** ****      ****** *  *  *  **    * *     *    * * *

consensus_3601#0      TGTGTGAGTGTCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGGTAAA 138
consensus_3601#1      TGCAAGTAAAGCATTAAAGTGTGTGTGTATGTGTGTGTGTCTGTGCCGTGGTTAGATAAA 357
                      **   *     ******************************************** ****

consensus_3601#0      ATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGG 198
consensus_3601#1      ATCCCTTCGCAAACCCGCGTGCTGTAGCAGCATCCGTGTGTGCTCCCGATGTGGTCCAGG 417
                      ************************************************************

consensus_3601#0      TGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTT 258
consensus_3601#1      TGATTCTGGTACACCTTGTCTGTGTGTACGTGCGTGTGTGTGTTTCTTCCTCCTCCTTTT 477
                      ************************************************************

consensus_3601#0      TGCTTGTAAAATTTCATCCCCCCA--CCCCACACCATCTTTAAAATTTTCCCGCAAGGGA 316
consensus_3601#1      TGCTTGTAGAATTACCTCCCTCCAATCTCCCCACCATCTTTAAAATTTTCCCGCAAGGGA 537
                      ******** **** * **** ***  * ** *****************************

consensus_3601#0      AAAGGCGGCGATAACAAAACCCTATCACAGTGCCCAACAGTGGGAAGTGTTGCAGGAGTG 376
consensus_3601#1      AAAGGCGGCGAAAACAAAACCCTATCACAGTGCCCTAAA--GGGAAATGTTGCAGGAGTG 595
                      *********** *********************** * *  ***** *************

consensus_3601#0      A--GTGTGTGTGTTCATGTGCTTGTCTCGTGTTTTCTTCTCCCCACTTTCCACCATCTCG 434
consensus_3601#1      AATGTGTGTGTGTTCATGTGCTTGTCTCGGGTTTTCTTCTCCCCACTTTCCACCATCTCG 655
                      *  ************************** ******************************

consensus_3601#0      TGAAGCGTGTTTCTCGACAAGTTTCCCTCACTCAGCTGATTTGATTCCGGTTGAAAAGGC 494
consensus_3601#1      TGAAG------------------------------------------------------- 660
                      *****                                                       

consensus_3601#0      AGCTTAGTAGCAGCAGCAGCAGCAACAGCAGTAGCAACGCTTCCGCACACCTACTTTACA 554
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      CCGATAGCAACAACGCGAAGACTGCCCGCAGGAACAGAGTGCGTGAAATCATAAAAATGG 614
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      ATAAACGAACGGGCATGAAAATTGGATTACTCTGCGTGCTGCTTGGAGTGTGTTCGGCGG 674
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      TGAAAATCATCAACCTGAAAGTTCCCTCCACCTACCTGCTGGATCAGACGTCCAAAACGC 734
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      CAGACCCGCTAATACTGGACTGCGAGTACGAGGTGGACGAAAGCGAGAAGGGATTCGTGT 794
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      TAAAATGGCTCCTGGACGGTCAACCGGGTCTACCAGTGGATACCGTCGAAAAATCCATTC 854
consensus_3601#1      ------------------------------------------------------------
                                                                                  

consensus_3601#0      CCCTTCCAATCTTTTAAGAACCGTGTCGACACCAGCTACGTTCGTGTCG 903
consensus_3601#1      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)