These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGCCGGAGCTGGTTGTGGCCAACCGGGACAAGATACTGCCGCAGTTTTTGGACATGATTTCGAAGCTG] [+] EMBL BM606891 [CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGCCGGAGCTGGTTGTGGCCAACCGGGACAAGATACTGCCGCAGTTTTTGGACATGATTTCGAAGCTG] [+] EMBL BM612968 [ ccgCTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGC ] consensusID : consensus_3605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCGGACGCGTGGGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCTGGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACTGGCCCGCAGTTTTTGGACATGATTTCGAA] [+] EMBL BM581747 [CCGCGGACGCGTGGGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCTGGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACTGGCCCGCAGTTTTTGGACATGATTTCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3605#0 CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGG 60 consensus_3605#1 ------------CCGCGGACGCGTG-GGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGG 47 * * * *** ******************************** consensus_3605#0 AATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAG 120 consensus_3605#1 AATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAG 107 ************************************************************ consensus_3605#0 AAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAA 180 consensus_3605#1 AAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAA 167 ************************************************************ consensus_3605#0 CAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCA 240 consensus_3605#1 CAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCA 227 ************************************************************ consensus_3605#0 ACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGC 300 consensus_3605#1 ACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGC 287 ************************************************************ consensus_3605#0 TCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAA 360 consensus_3605#1 TCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAA 347 ************************************************************ consensus_3605#0 TGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGG-TCAAAGACGTCTCCAGCCTTTCC 419 consensus_3605#1 TGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCC 407 ************************************ *********************** consensus_3605#0 ATCGACATTG-AGCACGA-TGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGG 477 consensus_3605#1 ATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGG 467 ********** ******* ***************************************** consensus_3605#0 CCGC-TTGTGGGCAGTCCGTG-ATGGTTCCG-TTCTATGA-GGTGCTGTTGTCCTTTCTG 533 consensus_3605#1 CCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTG 527 **** **************** ********* ******** ******************* consensus_3605#0 CGCTGCAGCATGACCC-ACATTCAGTCGCGAA--TCCAGGAAGATTCGCTCCTG-CTGCT 589 consensus_3605#1 CGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCT 587 **************** *************** ******************** ***** consensus_3605#0 GGATGTACTGCTCCAGTACCTGCCGG--AGCTGGTTGTGGCCAACCGGGACA-AGATACT 646 consensus_3605#1 GGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACT 647 ************************** ************************ * * *** consensus_3605#0 G--CCGCAGTTTTTGGACATGATTTCGAAGCTG 677 consensus_3605#1 GGCCCGCAGTTTTTGGACATGATTTCGAA---- 676 * ************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||