These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 760 fasta sequence [CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTGAATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCCCTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGTAGTCCTTCAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCGCCCCGCAAAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCCCACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAACCGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGGTGGCAGCAGGAGCAGCAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGCGCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCCCTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA] [+] EMBL BM637959 [CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTGAATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCCCTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGTAGTCCTTCAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCGCCCCGCAAAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCCCACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAACCGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGGTGGCAGCAGGAGCAGCAGCAACGGCTTG ] [-] EMBL AGA284499 [ TTCCCATTCTGGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGG GTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGA GCAGCCGACTCACATTTTCCAGCGACACGGCAAACTAGCGCAGTAGTAGGTGGCGGCGGTGGTGGTGGCAGCAGCAGCAACAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGCGCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCCCTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA] consensusID : consensus_3608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TTCTACTCCAAAGAGTCCTTCAAGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCCCCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTAGTGGGGGAGAA] [+] EMBL AGA285803 [TTCTACTCCAAAGAGTCCTTCAAGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCCCCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTAGTGGGGGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3608#0 CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTG 60 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 AATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCC 120 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 CTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGT 180 consensus_3608#1 --------------------------------------TTCTACTCCAAAGAGTCCTTCA 22 * * ***** ** * consensus_3608#0 AGTCCTT-CAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCA 239 consensus_3608#1 AGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCA 82 *** * **** * * ************** *********************** consensus_3608#0 CTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCG 299 consensus_3608#1 CTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCC 142 *********************************************************** consensus_3608#0 CCCCGCAA-AAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCC 358 consensus_3608#1 CCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCC 202 **** * ********************************************** **** consensus_3608#0 CACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTG 418 consensus_3608#1 CACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGT--- 259 *********************** ********************************* consensus_3608#0 TAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATG 478 consensus_3608#1 -AGTGGGGGAGAA----------------------------------------------- 271 ************ consensus_3608#0 CAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAAC 538 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 CGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGG 598 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 TGGCAGCAGGAGCAGCAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGC 658 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 GCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCC 718 consensus_3608#1 ------------------------------------------------------------ consensus_3608#0 CTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA 760 consensus_3608#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||