These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTACCCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTTTTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTTTTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTACACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGTGTGTGTGTATTTTTTCGCCTTTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCTCTCTCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTATTGAACTATAAAATCGTACGATGCCTTCGCCTTTTGCCTAATGCTTCTTCTACATGGATGGGTGTACATGGTGTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACA] [+] EMBL BM642172 [CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTACCCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTTTTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTTTTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTACACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGT ] [+] EMBL AGA284669 [ ATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGTGTGTGTGTATTTTTTCGCCTTTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCTCTCTCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTATTGAACTATAAAATCGTACGATGCCTTCGCCTTTTGCCTAATGCTTCTTCTACATGGATGGGTGTACATGGTGTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACA] consensusID : consensus_3614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [GTGAGCGGGATTGTTTTCTGTATCNTTCGNTTTNTTGCCCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGCTGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCCCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATCGTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGTNTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTAGCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAAATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTTGTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT] [-] EMBL AL931895 [GTGAGCGGGATTGTTTTCTGTATCNTTCGNTTTNTTGCCCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGCTGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCCCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATCGTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGTNTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTAGCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAAATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTTGTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3614#0 CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTAC 60 consensus_3614#1 ------------------------------------------------------------ consensus_3614#0 CCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTT 120 consensus_3614#1 ------------------------------------------------------------ consensus_3614#0 TTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTT 180 consensus_3614#1 ------------------------------------------------------------ consensus_3614#0 TTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTAC 240 consensus_3614#1 ------------------------------------------------------------ consensus_3614#0 ACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGC 300 consensus_3614#1 ---------------------GTGAGCGGG-ATTGTTTTCTGTATCNTTCGNTTTNTTGC 38 * * * * ** ** * * ** ** ** **** consensus_3614#0 CCACTCGTTCT---CGCTATGATTATGATC-AATTCGTC--TCACGGTCTAG--AATGGC 352 consensus_3614#1 CCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGC 98 ********* ** ******* **** ****** *********** * *** consensus_3614#0 TGCTCTCCCCTTTATG----TGTGTGTGTGTATTT-TTTCGCCTTTTAATGTGTATACAT 407 consensus_3614#1 TGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACAT 158 **** ** * ** ************ * ** **** *************** consensus_3614#0 ATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATC 467 consensus_3614#1 ATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATC 218 ************************************************************ consensus_3614#0 TCTCT-CTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTA-TTGAACTATAAAATC 525 consensus_3614#1 CCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATC 278 **** ************************************** *************** consensus_3614#0 GTACGATGCCTTCGCCTTT--TGCCTAATGCTT-CTTCTACATGGATGGGTGTACATGGT 582 consensus_3614#1 GTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGT 338 ***************** * ************ ************************** consensus_3614#0 GTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTG 642 consensus_3614#1 NTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTG 398 *********************************************************** consensus_3614#0 TGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAA 702 consensus_3614#1 TGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAA 458 ************************************************************ consensus_3614#0 ATTTATTACA-------------------------------------------------- 712 consensus_3614#1 ATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTA 518 ********** consensus_3614#0 ------------------------------------------------------------ consensus_3614#1 GCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAA 578 consensus_3614#0 ------------------------------------------------------------ consensus_3614#1 ATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTT 638 consensus_3614#0 -------------------------------------- consensus_3614#1 GTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT 676 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||