These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence [CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGAAGCTCACTAGTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG] [+] EMBL BM644109 [CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATG ] [+] EMBL AGA284802 [ CCTTACGATCAAATAGAGTTCCTTTATCTTATTTTTTCCACATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGAAGCTCACTAGTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG] consensusID : consensus_3617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [TTTTTTTTGTTTTTTTTTTTCTTTTTTTATTGATGTATTGTTTTTTTTGCTGTGGCTGATTTGCTTACACACTATCGATAAATCAAGTTAAATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTACCCCACCGCGACAAGGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGGAGAGTGTTTCAAGTGTATGGATGAAACTCTACGATTCTAGAAGTTTAATTAACCGATTCTAGAAGTTTAATTCTCGCCTTCTCTGGTGTTCCGAGTGTCCCCCTGCCCGTGGCTCTACCTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGA] [-] EMBL BX608946 [TTTTTTTTGTTTTTTTTTTTCTTTTTTTATTGATGTATTGTTTTTTTTGCTGTGGCTGATTTGCTTACACACTATCGATAAATCAAGTTAAATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTACCCCACCGCGACAAGGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGGAGAGTGTTTCAAGTGTATGGATGAAACTCTACGATTCTAGAAGTTTAATTAACCGATTCTAGAAGTTTAATTCTCGCCTTCTCTGGTGTTCCGAGTGTCCCCCTGCCCGTGGCTCTACCTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3617#0 CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTT 60 consensus_3617#1 --------------------------------TTTTTTTTGTTTTTTTTTTTCTTTTTTT 28 ************ *** ** ** consensus_3617#0 AAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCT 120 consensus_3617#1 AT-----TGATGTATTGTTTTTTTTGCT-GTGGCTGATTTGCTT------ACACACTATC 76 * * ** * * ** * ** ** * * *** *** consensus_3617#0 AACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTAC 180 consensus_3617#1 GATAAATCAAG---TTA-AATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTAC 132 * ** *** *** ** * ** * *** * *** consensus_3617#0 AGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCT 240 consensus_3617#1 CCCACCGCGACAA-GGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGG 191 * * **** * * *** * ***** *** * * * * * ** consensus_3617#0 CTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTA 300 consensus_3617#1 AGAGTGTTTCAAGTGTAT---------GGATGAAACTCTACGATTCTAGAAGTTTAATTA 242 *** * * * * * * * * *** * ** consensus_3617#0 TTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTT 360 consensus_3617#1 ACCGATTCTAGAAGTTTAATTCTCGCCTT-CTCTGGTGTTCCGAGTGTCCCCCTGCC-CG 300 ** ** * ** *** ** * ** * *** * * consensus_3617#0 TAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGC 420 consensus_3617#1 TGGCTCTACCTTTTTTTTTGTTT-CATTTCCAGCCTTGTTAAGCCCGGAAAACATC--AC 357 * ** * *** * ** * ** * * * * ** * *** * consensus_3617#0 TCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGA--AGCTCACTA 478 consensus_3617#1 CCTCTCCACTCGCTGCACTTTCGTTCCCATTG-ACATACTGCTAACCGATTAAGCCCTTA 416 ** * * * *** ** * * * * * * ** ** *** * * ** consensus_3617#0 GTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG 538 consensus_3617#1 CGATCAAATATACTTTTTTTATCTTATTTTT-TCCTCATTTTACAGCCTCCAAACAACAC 475 * *** ** *** * ** * * * *** * * * * * consensus_3617#0 -- consensus_3617#1 GA 477 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||