These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATATAAGTACTGCAATTGAAAAAAAAACTAAACAAGAACACTTCATAGTTTCAAGATGTAAGCAAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGGCTGGCAAAGAAAAGAAGAACCGGTCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGATAATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAATAAAGTAAAGTGTCCCACAAGTAAAGCAAATAGATAAGATAAGAAAGTAAAAGGTTATTTGTAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCGGCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCAGATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNTTACACGCATTTGG] [+] EMBL BX620379 [AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATATAAGTACTGCAATTGAAAAAAAAACTAAACAAGAACACTTCATAGTTTCAAGATGTAAGCAAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGGCTGGCAAAGAAAAGAAGAACCGGTCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGATAATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAATAAAGTAAAGTGTCCCACAAGTAAAGCAAATAGATAAGATAAGAAAGTAAAAGGTTATTTGTAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCGGCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCAGATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNTTACACGCATTTGG] consensusID : consensus_3620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACCACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATGTCTCCAAAAAATTAAAACTAAAAAAAAATCGGCATTACACGCATTGGGCAACGTTTGAAGCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTAAGAAAAAACACACTCACACACAA-ATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCATACCACGTCTCATCCATCCAGAACCGATGTNGTTTAAAGATAGTCAGTTTTGCAGCTATAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT] [+] EMBL AL931105 [CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACCACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATGTCTCCAAAAAATTAAAACTAAAAAAAAATCGGCATTACACGCATTGGGCAACGTTTGAAGCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTAAGAAAAAACACACTCACACACAA ATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCATACCACGTCTCATCCATCCAGAACCGATGTNGTTTAAAGATAGTCAGTTTTGCAGCTATAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT] [+] EMBL AGA284921 [ ACACTCACACACAACATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3620#0 AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATAT 60 consensus_3620#1 ---------------CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAA---AGTCATGT 42 * ** * * * * * * * ** *** ** ** * consensus_3620#0 AAGTACTGCAATTGAAAAAAAAACTAAACAAG-AACACTTCATAGTTTCAAGATGTAAGC 119 consensus_3620#1 AT-CGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACC 101 * * * * * ** ** * * * ** * ***** * consensus_3620#0 AAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGG--CTGGCAAAGAAAAGAAGAACCGG 177 consensus_3620#1 ACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATG 161 * * * ** * *** * * **** ** * * *** * consensus_3620#0 TCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGAT 237 consensus_3620#1 TCTCCAA---AAAATTAAAACTAAAAAAAAATC---GGCATTA--CACGCATTGGGCAAC 213 **** * * * * * ***** * ** ** * * *** * * * * consensus_3620#0 AATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAA 297 consensus_3620#1 GTTTGAA---GCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTA--AGA 268 * ** * ***** * * * * * * ** *** * * consensus_3620#0 TAAAGTAAAGTGTCCCACAAGTAAAGCA-AATAGATAAGATAAGAAA-GTAAAAGGTTAT 355 consensus_3620#1 AAAAACACACTCACACACAAATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAA 328 *** * * * * ***** ** * ******* * ** ** * * consensus_3620#0 TTG--TAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCG 413 consensus_3620#1 TTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAG--ACACATAAACACATGT-A 385 *** * **** **** * * * ** *** ** * * *** consensus_3620#0 GCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGT 473 consensus_3620#1 TTTATTTTGTCCCAGCAC-TGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCA 444 * **** ** * * * * ** ** *** * * * * * consensus_3620#0 TGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCA 533 consensus_3620#1 TACCACGTC-TCATCCATCCAGAACC-GATGTNGTTTAAAGATAGTCAGTTTTGCAGCTA 502 * * * * * * *** * * ** *** * * ** ** * consensus_3620#0 GATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNT-TACACGCATTTGG 589 consensus_3620#1 TAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT---------- 549 * **** * *** * * * * * *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||