cluster # 3628

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Anopheles gambiae
cluster # 3628 cluster # 3628 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3628#0 length = 668 sequences # 1

consensus_3628#1 length = 638 sequences # 2

consensusID : consensus_3628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGTCTTGGCTGTGTGTGCGCGGAGAGTGATACCAGCGAAACTGCTTACGTCATAAAAGCAATCGAAACACGAAAGTATTACTCGGTCGGTAGCAGGGAAGCCAGTCCGCGGCGGTGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCGCCTTTTGTGTACCCTGCACACACACACACGCGCGCGCGCGCCTCCGATGATCGCAAACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCAGGCCAAAACTGGGCCAAACGACCCCCCCCCCCCCACTGTCTAAGTCGATTGCACCTGGTGGCCCTACCGCCTTCCTCACTCTACTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACCACATCCACACGGCGAAAGAGAGCGAAAGCACACACCGTTGGATGTCTGTGCGTTTGTGCGTGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGATAAGGGTCGTTTCCACCACCCCTCGACAGACACAAACAAAGGAGCCGCACAAACACACATACCACACCCTCCT]

[+] EMBL BM633531             [CCGTCTTGGCTGTGTGTGCGCGGAGAGTGATACCAGCGAAACTGCTTACGTCATAAAAGCAATCGAAACACGAAAGTATTACTCGGTCGGTAGCAGGGAAGCCAGTCCGCGGCGGTGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCGCCTTTTGTGTACCCTGCACACACACACACGCGCGCGCGCGCCTCCGATGATCGCAAACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCAGGCCAAAACTGGGCCAAACGACCCCCCCCCCCCCACTGTCTAAGTCGATTGCACCTGGTGGCCCTACCGCCTTCCTCACTCTACTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACCACATCCACACGGCGAAAGAGAGCGAAAGCACACACCGTTGGATGTCTGTGCGTTTGTGCGTGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGATAAGGGTCGTTTCCACCACCCCTCGACAGACACAAACAAAGGAGCCGCACAAACACACATACCACACCCTCCT]




>consensus_3628#0
CCGTCTTGGCTGTGTGTGCGCGGAGAGTGATACCAGCGAAACTGCTTACGTCATAAAAGC
AATCGAAACACGAAAGTATTACTCGGTCGGTAGCAGGGAAGCCAGTCCGCGGCGGTGCAC
CAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCA
ACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCG
CCTTTTGTGTACCCTGCACACACACACACGCGCGCGCGCGCCTCCGATGATCGCAAACGC
GGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCA
GGCCAAAACTGGGCCAAACGACCCCCCCCCCCCCACTGTCTAAGTCGATTGCACCTGGTG
GCCCTACCGCCTTCCTCACTCTACTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACC
ACATCCACACGGCGAAAGAGAGCGAAAGCACACACCGTTGGATGTCTGTGCGTTTGTGCG
TGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGATAAGG
GTCGTTTCCACCACCCCTCGACAGACACAAACAAAGGAGCCGCACAAACACACATACCAC
ACCCTCCT

consensusID : consensus_3628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence

                              [CCGCGGACGCGTGGGCGAAAGTATTACTCGGTCGGCAGCAGGGAAGCCAGTCCGCGGCGGTGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCGCCTTTTGTGTACCCTGCACACACACACACACGCGCGCGTGCCTCCGATGATCGCAAACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCAGGCCAAAACTGGGCCAAACGTCCCCCCCCCCACTGTCTACGTCGATTGCACCTGGTGGCCCTACCGCCTTCCTCACTCTATTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACCACATCCACAGGGCGAAAGAGAACGAGAGCACACACCGTTGGATGTCTGTGCGTTTGTGCGTGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGACAAGGGTCGTTTCCACCACCCCTCGGCAGACACAAACAAAGGAGCCGCACAAACACACATACCACACCCTCCTCCCCACCACAGAAGGGAAAAGCGCTGCA]

[+] EMBL BM653514             [CCGCGGACGCGTGGGCGAAAGTATTACTCGGTCGGCAGCAGGGAAGCCAGTCCGCGGCGGTGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCGCCTTTTGTGTACCCTGCACACACACACACACGCGCGCGTGCCTCCGATGATCGCAAACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCAGGCCAAAACTGGGCCAAACGTCCCCCCCCCCACTGTCTACGTCGATTGCACCTGGTGGCCCTACCGCCTTCCTCACTCTATTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACCACATCCACAGGGCGAAAGAGAACGAGAGCACACACCGTTGGATGTCTGTGCGTTTGTGCGTGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGACAAGGGTCGTTTCCACCACCCCTCGGCAGACACAAACAAAGGAGCCGCACAAACACACATACCACACCCTCCTCCCCACCACAGAAGGGAAAAGCGCTGCA]
[+] EMBL AGA285288            [            acaCGAAAGTATTACTCGGTCGGCAGCAGGGAAGCCAGTCCGCGGCGGTGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCGCCTTTTGTGTACCCTGCACACACACACACACGCGCGCGTGCCTCCGATGATCGCAAACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCAGGCCAAAACTGGGCCAAACGTCCCCCCCCCCcac                                                                                                                                                                                                                                                                                                           ]




>consensus_3628#1
CCGCGGACGCGTGGGCGAAAGTATTACTCGGTCGGCAGCAGGGAAGCCAGTCCGCGGCGG
TGCACCAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACG
GGCCAACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCG
CCTCGCCTTTTGTGTACCCTGCACACACACACACACGCGCGCGTGCCTCCGATGATCGCA
AACGCGGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACC
GAGCAGGCCAAAACTGGGCCAAACGTCCCCCCCCCCACTGTCTACGTCGATTGCACCTGG
TGGCCCTACCGCCTTCCTCACTCTATTTCCTGGCCACCCAAACCTCACTTTTCTTACCGA
CCACATCCACAGGGCGAAAGAGAACGAGAGCACACACCGTTGGATGTCTGTGCGTTTGTG
CGTGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGACAA
GGGTCGTTTCCACCACCCCTCGGCAGACACAAACAAAGGAGCCGCACAAACACACATACC
ACACCCTCCTCCCCACCACAGAAGGGAAAAGCGCTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3628#0      CCGTCTTGGCTGTGTGTGCGCGGAGAGTGATACCAGCGAAACTGCTTACGTCATAAAAGC 60
consensus_3628#1      --------------------------------------------------CCGCGGACGC 10
                                                                         *    * **

consensus_3628#0      AATCGAAACACGAAAGTATTACTCGGTCGGTAGCAGGGAAGCCAGTCCGCGGCGGTGCAC 120
consensus_3628#1      GT-----GGGCGAAAGTATTACTCGGTCGGCAGCAGGGAAGCCAGTCCGCGGCGGTGCAC 65
                                ******************** *****************************

consensus_3628#0      CAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCA 180
consensus_3628#1      CAGTACGCGAGCAAATCGTTTCCTCCGGCGGGGAAGAAGAACAAGCCAGCCAACGGGCCA 125
                      ************************************************************

consensus_3628#0      ACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCG 240
consensus_3628#1      ACTCGTCACCGAACGGGAAGCTGCACCGAGCCCTGCACAGCGGGAGGGAAAATCGCCTCG 185
                      ************************************************************

consensus_3628#0      CCTTTTGTGTACCCTGCACACACACACACGCGCGCGCGCGCCTCCGATGATCGCAAACGC 300
consensus_3628#1      CCTTTTGTGTACCCTGCACACACACACACACGCGCGCGTGCCTCCGATGATCGCAAACGC 245
                      ***************************** ******** *********************

consensus_3628#0      GGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCA 360
consensus_3628#1      GGTGAAAAGCGCATCCGGATAGAGGGAGACAGAGAGGGGTCATTGTCGCTAGACCGAGCA 305
                      ************************************************************

consensus_3628#0      GGCCAAAACTGGGCCAAACGACCCCCCCCCCCCCACTGTCTAAGTCGATTGCACCTGGTG 420
consensus_3628#1      GGCCAAAACTGGGCCAAACG---TCCCCCCCCCCACTGTCTACGTCGATTGCACCTGGTG 362
                      ********************    ****************** *****************

consensus_3628#0      GCCCTACCGCCTTCCTCACTCTACTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACC 480
consensus_3628#1      GCCCTACCGCCTTCCTCACTCTATTTCCTGGCCACCCAAACCTCACTTTTCTTACCGACC 422
                      *********************** ************************************

consensus_3628#0      ACATCCACACGGCGAAAGAGAGCGAAAGCACACACCGTTGGATGTCTGTGCGTTTGTGCG 540
consensus_3628#1      ACATCCACAGGGCGAAAGAGAACGAGAGCACACACCGTTGGATGTCTGTGCGTTTGTGCG 482
                      ********* *********** *** **********************************

consensus_3628#0      TGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGATAAGG 600
consensus_3628#1      TGTGAAAAACAAAAACAACAACCAATCGCATTTTCCGTTCCTCCGCTTTCCTAGACAAGG 542
                      ******************************************************* ****

consensus_3628#0      GTCGTTTCCACCACCCCTCGACAGACACAAACAAAGGAGCCGCACAAACACACATACCAC 660
consensus_3628#1      GTCGTTTCCACCACCCCTCGGCAGACACAAACAAAGGAGCCGCACAAACACACATACCAC 602
                      ******************** ***************************************

consensus_3628#0      ACCCTCCT---------------------------- 668
consensus_3628#1      ACCCTCCTCCCCACCACAGAAGGGAAAAGCGCTGCA 638
                      ********