These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTGATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGGCGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAACGACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAGTGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCCTCCCTGCATTCTCAACAT] [+] EMBL BX627034 [CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTGATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGGCGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAACGACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAGTGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCCTCCCTGCATTCTCAACAT] consensusID : consensus_3648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 492 fasta sequence [TTGGGTGAATCGGTTTAACAACCGGCGCTACCTGCAGTGAACAACGGCATACTGGCCGGCATCGAGGGCCTGGACTATGACGATCCGATCGAGGGGATCGGTGGTATTGGTGGGGAAGGCGGTGGGTT-GGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGT-GGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATT-GGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL AGA285856 [TTGGGTGAATCGGTTTAACAACCGGCGCTACCTGCAGTGAACAACGGCATACTGGCCGGCATCGAGGGCCTGGACTATGACGATCCGATCGAGGGGATCGGTGGTATTGGTGGGGAAGGCGGTGGGTT GGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGT GGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATT GGACGCT ] [-] EMBL BM627189 [ GTGGTATTGGTGGGGGAGGCGGTGGGTTGGGCGTTGGCGCCGGACTGGGCGGTGGTGGCGTCGGTGGCGACGGGTTGAACGGGGGCGGCGCAGCACTCGGCTGCGTCAATGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGGTCGGCGGTGGTTCGGAACGGGGCAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTTTAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGACGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTGTGTGTGTGTAAGAACTCCCGGACGCGTGGGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3648#0 CTGGTCGTGTTCAAGTCGGCGCCGATCCTGAAGCGCACGCTCAAGGTGCGCCACGCGCTG 60 consensus_3648#1 -----------------------------------------------------TTGGGTG 7 * ** consensus_3648#0 ATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAAACCAAGTACCTGGGCCGGCAGTGG 120 consensus_3648#1 AATCGGTTTAACA-ACCGGCGCTACCTGCAGTGAACAACG-GCATACTGGCCGGCATCG- 64 * * * * ** * * *** * ** * * * * * ******** * consensus_3648#0 CGCAAGTCGAACATGAAGACGATCAGCGCGATCTACGCGAAGGTGCGCCACCGGTTGAAC 180 consensus_3648#1 ---AGGGCCTGGACTATGACGATC----CGATCGAGGGGATCG-GTGGTATTGGTGGG-- 114 * * * * * ******* ***** * * ** * * * * *** * consensus_3648#0 GACGACTGGGCGTTCGGGAACGATCTGGACGCGCGCCCCTGGGACTTCCAGGCGGACGAG 240 consensus_3648#1 GAAGGCGGTGGGTT-------------GGCGTTGGCGCC--GGACT---GGGCGGTGGTG 156 ** * * * * *** * ** ** ** ***** ***** * * consensus_3648#0 TGCGCCTTGAAGAGTGGGGTGGATCGGTTTAACAACCGGCGCAGCACTCGGCTGCGTCAA 300 consensus_3648#1 -GCGTCGGTGGCGACGGGTTGAACGGG-------GGCGGCGCAGCACTCGGCTGCGTCAA 208 *** * *** ** * ** ************************ consensus_3648#0 TGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGG 360 consensus_3648#1 TGGAGGGGGGGCTGGTGGGCCGGGTGGCGCTGGTGGGGTCGGCGGTGGTTCGGAACGGGG 268 ************************************************************ consensus_3648#0 CAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTT 420 consensus_3648#1 CAACGCCTGCTACGGCGGATTGGCCCGCAAACCGGAAGAGATCGAGCTGAGCGAAGAGTT 328 ************************************************************ consensus_3648#0 TAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGGGA 480 consensus_3648#1 TAAGCAAAACTACGAACTCTGGCTGCAGCAGGAAGTGTACAATAACAACATCGATTGG-A 387 ********************************************************** * consensus_3648#0 CGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTG 540 consensus_3648#1 CGCTCTGCTTGCAGTGGACGATTTTTCTTAGACGAGAAGCGCGGAGATGTGGAGCGTTTG 447 ************************************************************ consensus_3648#0 TGTGTGTGTAAGAACTCCCCCCCCCCTCCCCACCACCCAGTATATGTGTATGTCCTCCCC 600 consensus_3648#1 TGTGTGTGTAAGAACTCCCGGACGCGTGG--GCGGACGCGTGGGCGG------------- 492 ******************* * * * * * ** * consensus_3648#0 TCCCTGCATTCTCAACAT 618 consensus_3648#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||