These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 952 fasta sequence [TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACGGCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTACTACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCAGCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGTGCAGATTCCAGTTGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAAGGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCAGAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATTATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC] [+] EMBL BX625377 [TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACGGCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTACTACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCAGCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGT ] [-] EMBL BX466806 [ CGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTT GGACTACGGGTACGTGCAGATTCCAGTTGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAAGGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCAGAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATTATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC] consensusID : consensus_3659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CAGAATCCCNCGAGGTTTAAATTCGGCTCTTTCTATCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGCGTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGCCAGCCACGCCAGCCAGCACGCAACTCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGTACGCTGCANAATATCCACGCTCTGACAACTCGNGNGCTGCACACACACCGCAACACACGGACTCACAACACGGCAGGTAACTGCGCCGGNCTCTAAC] [+] EMBL AL692036 [CAGAATCCCNCGAGGTTTAAATTCGGCTCTTTCTATCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGCGTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGCCAGCCACGCCAGCCAGCACGCAACTCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGTACGCTGCANAATATCCACGCTCTGACAACTCGNGNGCTGCACACACACCGCAACACACGGACTCACAACACGGCAGGTAACTGCGCCGGNCTCTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3659#0 TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACG 60 consensus_3659#1 ------------------------------------------------------------ consensus_3659#0 GCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTAC 120 consensus_3659#1 ------------------------------------------------------------ consensus_3659#0 TACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCA 180 consensus_3659#1 ------------------------------------------------------------ consensus_3659#0 GCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCC 240 consensus_3659#1 ----------------CAGAATCCCNCGAGGTTTAAATTC-GGCTC-TTTCTATCC-TCC 41 * * * * ****** ***** ********* *** consensus_3659#0 CAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCA 300 consensus_3659#1 CAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCA 101 ************************************************************ consensus_3659#0 GTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTC 360 consensus_3659#1 GTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTC 161 ************************************************************ consensus_3659#0 CCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGA 420 consensus_3659#1 CCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGA 221 ********************************************** ************* consensus_3659#0 ACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACA 480 consensus_3659#1 ACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACA 281 ************************************************************ consensus_3659#0 GCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCG 540 consensus_3659#1 GCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCG 341 ************************************************************ consensus_3659#0 CTTGG-TGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGA-TCAGGCGC 598 consensus_3659#1 CTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGC 401 ***** ********************************************* ******** consensus_3659#0 GTG-TTTCGCCCCAAGGTTC--GGGCACGCTACAACAAG-TGATCTACCAGCAGCAGCAG 654 consensus_3659#1 GTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGC--CAGCCA 459 *** ************* * **************** ************ **** consensus_3659#0 CAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGTGCAGATTCCAGT 714 consensus_3659#1 CGCCAGCCAGCACG-CAAC--TCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGT 516 * **** * * * ** * * *** ** ** * * * *** * ** consensus_3659#0 TGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAA 774 consensus_3659#1 ACGCTGCANAATATCCACGCTCTG-ACAACTCGNGNGCTGCACACACACCGCAACACACG 575 * * ** * ** ** * * * * * consensus_3659#0 GGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCA 834 consensus_3659#1 GACTCACAACACGGCAG-GTAACTGCGCCGGNCTCTAAC--------------------- 613 * * * *** * * * * ** ** *** ** *** consensus_3659#0 GAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATT 894 consensus_3659#1 ------------------------------------------------------------ consensus_3659#0 ATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC 952 consensus_3659#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||