These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1282 fasta sequence [GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAACAAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAGTTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAGATCTTGAACGCATTTAAGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAATTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCAAACACCGGCCCTGATGGAGCTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTAACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCCGGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTT-AAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCTTTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTTGGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTTTCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGTAACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGTCATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTAGCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGGTATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACGGGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAAGATAATAATTTATTTCCTAATCGCATTT] [+] EMBL BX624750 [GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAACAAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAGTTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAGATCTTGAACGCATTTAAGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAATTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCAAACACCGGCCCTGATGGAGCTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTAACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCCGGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTT AAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCT ] [+] EMBL BM610395 [ ccgCGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTTAAAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCTTTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTTGGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTTTCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGTAACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGTCATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTAGCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGGTATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACGGGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAAGATAATAATTTATTTCCTAATCGCATTT] consensusID : consensus_3663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [AGAATCGGCCACGAGGTTGATNAGGAGATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGGAGGCTGCAGNGTG] [+] EMBL BX469426 [AGAATCGGCCACGAGGTTGATNAGGAGATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGGAGGCTGCAGNGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3663#0 GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAAC 60 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 AAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAG 120 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 TTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAG 180 consensus_3663#1 -----------------------AGAATCGGCCACGAGG-------TTGATN---AGGAG 27 * ***** ** * * *** ***** consensus_3663#0 ATCTTGAACGCATTTAA-GCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTC 239 consensus_3663#1 ATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTC 87 ***************** ****************************************** consensus_3663#0 CCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTG--AAGGCCAAGCTGTTCGAA 297 consensus_3663#1 CCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAA 147 **************************************** ****************** consensus_3663#0 AAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAA-TTTCGTGAT 356 consensus_3663#1 AAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGAT 207 ************************************************** ********* consensus_3663#0 GACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCG 416 consensus_3663#1 GACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCG 267 ************************************************************ consensus_3663#0 CGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGC-AAACACCGGCCCTGATGG 475 consensus_3663#1 CGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGG 327 ***************************************** ********* ******** consensus_3663#0 AG-CTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTA 534 consensus_3663#1 AGGCTGCAGNGTG----------------------------------------------- 340 ** ****** *** consensus_3663#0 ACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCC 594 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAG 654 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTTAAACTTAACGG 714 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 ATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCT 774 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 TTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTT 834 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTT 894 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 TCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGT 954 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 AACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGT 1014 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 CATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTA 1074 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGG 1134 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 TATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACG 1194 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAA 1254 consensus_3663#1 ------------------------------------------------------------ consensus_3663#0 GATAATAATTTATTTCCTAATCGCATTT 1282 consensus_3663#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||