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Anopheles gambiae
cluster # 3663 cluster # 3663       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3663#0 length = 1282 sequences # 2  
consensus_3663#1 length = 340 sequences # 1  

consensusID : consensus_3663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1282
fasta sequence
                              [GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAACAAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAGTTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAGATCTTGAACGCATTTAAGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAATTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCAAACACCGGCCCTGATGGAGCTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTAACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCCGGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTT-AAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCTTTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTTGGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTTTCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGTAACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGTCATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTAGCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGGTATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACGGGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAAGATAATAATTTATTTCCTAATCGCATTT]

[+] EMBL BX624750             [GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAACAAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAGTTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAGATCTTGAACGCATTTAAGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAATTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCAAACACCGGCCCTGATGGAGCTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTAACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCCGGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTT AAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM610395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgCGCCAACGAAACGACGCTCGGCAACGAGGCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTTAAAACTTAACGGATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCTTTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTTGGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTTTCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGTAACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGTCATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTAGCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGGTATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACGGGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAAGATAATAATTTATTTCCTAATCGCATTT]


>consensus_3663#0 GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAAC AAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAG TTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAG ATCTTGAACGCATTTAAGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCC CAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGAAGGCCAAGCTGTTCGAAAAG GAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAATTTCGTGATGACG GCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCT TTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCAAACACCGGCCCTGATGGAGCTG CAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTAACGGCG GCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCCGGCGTA AACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAGGCGGCA AGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTTAAACTTAACGGATATCA TCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCTTTAGGC AGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTTGGGTCG AGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTTTCGTTG ATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGTAACTGA TTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGTCATGAA TAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTAGCAAAC AAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGGTATGAT TGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACGGGAGAT GCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAAGATAAT AATTTATTTCCTAATCGCATTT



consensusID : consensus_3663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence
                              [AGAATCGGCCACGAGGTTGATNAGGAGATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGGAGGCTGCAGNGTG]

[+] EMBL BX469426             [AGAATCGGCCACGAGGTTGATNAGGAGATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGGAGGCTGCAGNGTG]


>consensus_3663#1 AGAATCGGCCACGAGGTTGATNAGGAGATCTTGAACGCATTTAACGCTCTGCAACGAGGA TGGTGTCGTGCCGGAGCAGGAACTGTCCCAATTTATCGTTCAGGCATGCACTGAGATTCC CAAACTGTGAAGGCCAAGCTGTTCGAAAAGGAGCAACAGCTGGCGACGATGGCAAGCAAT GCCACGAGTGGGTCCAAGTTTCGTGATGACGGCCAGCTGGCACCAAGCGCTGAGCGAAGC GAAACGACAGTACGAGGCGATCGATCGCGCTTTGGAGACACTGGACAGCGTCAAAGCGAT CGTACAGCGAAACACCGGNCCTGATGGAGGCTGCAGNGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3663#0      GACGATCTGAAGGACGCCTACCATCAGCTGCAGGTGCGAGGCAGCGAACTGAACAGCAAC 60
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      AAGGTGGAGTTGCTGAAACACCGACAAGAAATCGATAAATTAAACGAAGACATTTGTCAG 120
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      TTAAGCACACTGTGCAGTGATAGCAAGCAGGCCAAGAAGATTGTGATCGATCGGGAGGAG 180
consensus_3663#1      -----------------------AGAATCGGCCACGAGG-------TTGATN---AGGAG 27
                                               *   ***** ** *       * ***    *****

consensus_3663#0      ATCTTGAACGCATTTAA-GCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTC 239
consensus_3663#1      ATCTTGAACGCATTTAACGCTCTGCAACGAGGATGGTGTCGTGCCGGAGCAGGAACTGTC 87
                      ***************** ******************************************

consensus_3663#0      CCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTG--AAGGCCAAGCTGTTCGAA 297
consensus_3663#1      CCAATTTATCGTTCAGGCATGCACTGAGATTCCCAAACTGTGAAGGCCAAGCTGTTCGAA 147
                      ****************************************  ******************

consensus_3663#0      AAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAA-TTTCGTGAT 356
consensus_3663#1      AAGGAGCAACAGCTGGCGACGATGGCAAGCAATGCCACGAGTGGGTCCAAGTTTCGTGAT 207
                      ************************************************** *********

consensus_3663#0      GACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCG 416
consensus_3663#1      GACGGCCAGCTGGCACCAAGCGCTGAGCGAAGCGAAACGACAGTACGAGGCGATCGATCG 267
                      ************************************************************

consensus_3663#0      CGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGC-AAACACCGGCCCTGATGG 475
consensus_3663#1      CGCTTTGGAGACACTGGACAGCGTCAAAGCGATCGTACAGCGAAACACCGGNCCTGATGG 327
                      ***************************************** ********* ********

consensus_3663#0      AG-CTGCAGCGTGATCTGGAGGAGACGAACTTTGCTTCCGCGTCCAGCTTTCCGCTGGTA 534
consensus_3663#1      AGGCTGCAGNGTG----------------------------------------------- 340
                      ** ****** ***                                               

consensus_3663#0      ACGGCGGCCCAGCTCAACCAGCTCAACTGTGGCCAGGTCGGTACGAACGGCAATGGGGCC 594
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GGCGTAAACGGCAACGGCATTATTGATCTGAACGCCAACGAAACGACGCTCGGCAACGAG 654
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GCGGCAAGTGTGGGGGCCGATCCGAGCTGCTACATTGACTCGACTGCTTAAACTTAACGG 714
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      ATATCATCAGCTGGGGTAGATAGAACGCTTTATTTATTACTACCTTCGCTCTCTCTCTCT 774
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      TTAGGCAGACAGGCGGTAGCATTCATTTTACTTTAATTGTTTACCACTCGTGGGACTTTT 834
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GGGTCGAGGATGGGATGGAGTGTTTTTTTTCCATTTTTTTGTTTTTGTGTTAGTGTTTTT 894
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      TCGTTGATCAAAACAAGCATGATATTATCATCATTCATTTTCGAGCGCATGGTCCATAGT 954
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      AACTGATTGCATTTCGTTTTGCTACACTTAACTCTGGGGCAGTACGTAAGTGGCGACCGT 1014
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      CATGAATAGTGAACCATGTTGAACAGATATTAGAATCGTTAGCAATCGTAGCAGCAAGTA 1074
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GCAAACAAGGTAACAATGTCCCCCCTTCTCTAGTTCGATAGTTAGCATTAATCGTAGAGG 1134
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      TATGATTGTGATTTGCTGTTCTTGATACTATACAGACTTGATTGAAACGATTATTGGACG 1194
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GGAGATGCAAGATTAGAGCCAATAGGGAAGGTGTTGTTACTCGAGACAAATAAGTGTAAA 1254
consensus_3663#1      ------------------------------------------------------------
                                                                                  

consensus_3663#0      GATAATAATTTATTTCCTAATCGCATTT 1282
consensus_3663#1      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)