These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence [GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGAGACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCATCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGCCGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACTTTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGAA] [+] EMBL CNS08TOV [GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGAGACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCATCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGCCGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACTTTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCC ] [-] EMBL CNS08TOW [ ATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTCCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACCACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGAA] consensusID : consensus_3670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [TTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGAAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACTATTGCCCCGGACGCGTGGGCGG] [-] EMBL BM610147 [TTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGAAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACTATTGCCCCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3670#0 GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGA 60 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 GACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCA 120 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 TCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGC 180 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 CGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACT 240 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 TTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGA 300 consensus_3670#1 -----------------------------------------------------TTCCAGA 7 ******* consensus_3670#0 GCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGC 360 consensus_3670#1 GCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGA-AAATTGGC 66 *************************************************** ******** consensus_3670#0 ATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCC 420 consensus_3670#1 ATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCC 126 ************************************************************ consensus_3670#0 GCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAA 480 consensus_3670#1 GCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAA 186 ************************************************************ consensus_3670#0 CAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAA 540 consensus_3670#1 CAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAA 246 ************************************************************ consensus_3670#0 GTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCT 600 consensus_3670#1 GTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACT 306 ************************************************ ** ** * ** consensus_3670#0 GTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATT 660 consensus_3670#1 ATTGCCCCGGACGCGTGGGCGG-------------------------------------- 328 ** * * * consensus_3670#0 GAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATC 720 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 TACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGA 780 consensus_3670#1 ------------------------------------------------------------ consensus_3670#0 A 781 consensus_3670#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||