These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence [CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTCCGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTGTTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCATTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAGGATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAACACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACCGCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCACCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATATGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGTNATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACACAAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATGGTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCACAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCNCNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAGNCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACTACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAACTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAAAGCANAANAACA] [+] EMBL AL692318 [CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTCCGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTGTTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCATTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAGGATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAACACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACCGCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCACCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATATGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGTNATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACACAAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATGGTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCACAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCNCNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAGNCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACTACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAACTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAAAGCANAANAACA] consensusID : consensus_3673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [GCGACGGACGTTTAAGCCGCCGGGGAAGGCGCATAGAATTTGTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGTACCCCCATTGTCCCCGATAGTCGCAATGTGTGGGGGAAACGGACAGGGATAGATGAGGATATGTAAGGAAGGAGGAAAGGGGGATCTACGGGATGATCATTAAAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGTGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCCGATCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGTTTAGTGGCACCGTTTTGCGGTTTTTGGTTTGCGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTCCATATTGGAAAAATAAGCAAGCTTATAGAGTTTAAATGTGATGATGATGTATGTCGAAACAAAACGGAGAGCTAGAAGAAGCAAGGGGAAGCGTGAAATAACAACCCCCCCGTAAACGTAGATCGTAACCAGTTGCGTGCAGCTTGTAGGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACTACTACTACTACTATTACTACTACTACTGCTCCTTACTGAAAAGCAAATCTCTTCCTCCTAACCAATCAAACCAGCCAACAGAGATCCGTTCTGCATACTCTACTCATTACTAACGGCAACTATTTAAGCTAC] [-] EMBL CNS08M3O [GCGACGGACGTTTAAGCCGCCGGGGAAGGCGCATAGAATTTGTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGTACCCCCATTGTCCCCGATAGTCGCAATGTGTGGGGGAAACGGACAGGGATAGATGAGGATATGTAAGGAAGGAGGAAAGGGGGATCTACGGGATGATCATTAAAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGTGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCCGATCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGTTTAGTGGCACCGTTTTGCGGTTTTTGGTTTGCGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTCCATATTGGAAAAATAAGCAAGCTTATAGAGTTTAAATGTGATGATGATGTATGTCGAAACAAAACGGAGAGCTAGAAGAAGCAAGGGGAAGCGTGAAATAACAACCCCCCCGTAAACGTAGATCGTAACCAGTTGCGTGCAGCTTGTAGGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACTACTACTACTACTATTACTACTACTACTGCTCCTTACTGAAAAGCAAATCTCTTCCTCCTAACCAATCAAACCAGCCAACAGAGATCCGTTCTGCATACTCTACTCATTACTAACGGCAACTATTTAAGCTAC] consensusID : consensus_3673#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [AGATTGCCCAGGCTTATTTCTGTTAGGGCTGGTCCCTTCTTGCGCGTGTAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGCACCCCCATTGTCCCCGAGAGTCGCAATGTGTGGGAGAAACGGACACGNGCATAGACTGAGGATATGTACAGGAAGGAGGAACAGGGGGATCTACGGGATGATCATTACAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGAGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCGATCCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGGTTCTAGCTGGCACCGTTTNTGCGGTATNTAGGTTTGCGGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTACCATATTGGAAAAAATAAAGCAAGCTTTATAGGAGTTTAACATGTGCATGATGATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACAAGAACCCGCGTAACACGTAGATCGGTAACCAGATTGCGTGCAGACTTGTAAGAGCAAACTGGTCCAATACCACCTATAGCGTACTCTTAA] [+] EMBL AL693685 [AGATTGCCCAGGCTTATTTCTGTTAGGGCTGGTCCCTTCTTGCGCGTGTAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGCACCCCCATTGTCCCCGAGAGTCGCAATGTGTGGGAGAAACGGACACGNGCATAGACTGAGGATATGTACAGGAAGGAGGAACAGGGGGATCTACGGGATGATCATTACAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGAGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCGATCCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGGTTCTAGCTGGCACCGTTTNTGCGGTATNTAGGTTTGCGGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTACCATATTGGAAAAAATAAAGCAAGCTTTATAGGAGTTTAACATGTGCATGATGATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACAAGAACCCGCGTAACACGTAGATCGGTAACCAGATTGCGTGCAGACTTGTAAGAGCAAACTGGTCCAATACCACCTATAGCGTACTCTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3673#1 ----------------------------------------GCGACGGACGTTTAAGCCGC 20 consensus_3673#2 ------------------------------------------------------------ consensus_3673#0 CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTC 60 consensus_3673#1 CGGGGA-AGGCGCATAGAATTT-GTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAG 78 consensus_3673#2 ----------------------------------AGATTGCCCAGGCTTATTTCTGTTAG 26 consensus_3673#0 CGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAG 120 * ** *** * ********** consensus_3673#1 GGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTG--TG 136 consensus_3673#2 GGCTGGTCCCTTCTTGC-GCGTGT-AAGGCGTGAAGCTAGTCATCAATATATGTTG--TG 82 consensus_3673#0 GGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTG 180 ***************** ****** ****************************** ** consensus_3673#1 TTAAAG---CAGGG-AAGTAGGGG--AGTTTTTT-TTCTGTAGA---TTGTA--CCCCCA 184 consensus_3673#2 TTAAAG---CAGGGGAAGTAGGGG--AGTTTTTT-TTCTGTAGA---TTGCA--CCCCCA 131 consensus_3673#0 TTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCA 240 ** ** ***** **** *** ******** ****** *** ****** consensus_3673#1 TTGTCCCCGAT-AGTCGC-AATGTGTGGG--GGAAACGG-ACA--GGGATAGA---TGAG 234 consensus_3673#2 TTGTCCCCGAG-AGTCGC-AATGTGTGGG--AGAAACGG-ACACGNGCATAGAC--TGAG 184 consensus_3673#0 TTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAG 300 ********** ****** ********** ****** *** ** **** consensus_3673#1 GAT-ATGTA-AGGAA----GGAGGAA-AGGGGGATC-TACGGGATGAT-----CATTAAA 281 consensus_3673#2 GAT-ATGTACAGGAA----GGAGGAACAGGGGGATC-TACGGGATGAT-----CATTACA 233 consensus_3673#0 GATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAA 360 *** **** *** * * *** * ********* *** ** ** **** * consensus_3673#1 ---AGACTGAACCCTCGCCGCAAAG---AACAGCGATA--CAATGTGTGCGGAACCAACC 333 consensus_3673#2 ---AGACTGAACCCTCGCCGCAAAG---AACAGCGATA--CAATGTGAGCGGAACCAACC 285 consensus_3673#0 CACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACC 420 ******************* * * ***** * ** **** ************ consensus_3673#1 GAAC---CAAACG--ATCGCGAT-TGGGAAA-ATAAGATGTCCCC-AGCCGA--TCGTA- 382 consensus_3673#2 GAAC---CAAACG--ATCGCGAT-TGGGAAA-ATAAGATGTCCCC-AGCGAT--CCGTA- 334 consensus_3673#0 GCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCA 480 * ** **** ******** ******* ************* *** *** consensus_3673#1 -CCGGGCA-AGCATGGAA-CACGCT-CATCCCGTACATGCG--TTTAG-TGGCACCGTTT 435 consensus_3673#2 -CCGGGCA-AGCATGGAA-CACGCT-CATCCCGTACATGCGGTTCTAGCTGGCACCGTTT 390 consensus_3673#0 CCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATA 540 * ***** ******** ****** ****** * * * * * * consensus_3673#1 T-GCGGTTTT--T-GGTTTGCG-CAAAGGTATCAT-GTTCTTTGAAGAATGTAACATTGT 489 consensus_3673#2 NTGCGGTATN--TAGGTTTGCGGCAAAGGTATCAT-GTTCTTTGAAGAATGTAACATTGT 447 consensus_3673#0 TGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGT 600 ** ** *** * ** * ** * *** *** ** consensus_3673#1 T-CCATATTGGAAAAA-----TAAGCAA-GCTT-ATAG--AGTTTAA-ATGTG-ATGATG 537 consensus_3673#2 TACCATATTGGAAAAAA---TAAAGCAA-GCTTTATAGG-AGTTTAACATGTGCATGATG 502 consensus_3673#0 NATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACAC 660 * * * * **** * * * ** * * ** consensus_3673#1 ATGTA-TGTCGAAAC--AAAACGGAGAGCTAGAA-GAAGCAAGGGGAAG--CGTGAAATA 591 consensus_3673#2 ATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACA 562 consensus_3673#0 AAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATG 720 * ** * * * * * ** * * * * * ** consensus_3673#1 ACAACCCCCCCGT-AAACGTAGATCG--TAACCAG-------TTGCGTGCAG-CTT-GTA 639 consensus_3673#2 AGAACCCGCGTA--ACACGTAGATCGG-TAACCAGA------TTGCGTGCAGACTT-GTA 612 consensus_3673#0 GTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCA 780 ** * * * ** ** ** ** **** * * * * consensus_3673#1 GGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACT-ACTACTACTACTA 698 consensus_3673#2 AGAG--------CAAACTGGTCCAATACCACCTATAGCGTACTCTT-AA----------- 652 consensus_3673#0 CAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCN 840 * * * ** ** * consensus_3673#1 TTACTACTACTACTGCTCCTTACTGAAAAGC----AAATCTCTTCCTCCTAACCAATCAA 754 consensus_3673#2 ------------------------------------------------------------ consensus_3673#0 CNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAG 900 consensus_3673#1 ACCAGCCA------ACAGAGATCCGTTCTGCATAC--TCTACTCATTACTAACGGCAACT 806 consensus_3673#2 ------------------------------------------------------------ consensus_3673#0 NCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACT 960 consensus_3673#1 ATTTAAGCTAC------------------------------------------------- 817 consensus_3673#2 ------------------------------------------------------------ consensus_3673#0 ACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAA 1020 consensus_3673#1 ------------------------------------------------------------ consensus_3673#2 ------------------------------------------------------------ consensus_3673#0 CTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAA 1080 consensus_3673#1 ------------ consensus_3673#2 ------------ consensus_3673#0 AGCANAANAACA 1092 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||